I would recommend validating the repeated SHA256 against VirusTotal or calculating it locally on the affected host to confirm which file content is producing the match.
False positives of this nature, as you have mentioned, are most often caused by an IOC list containing hashes of benign or extremely common files rather than an issue with FIM.
Please let me know what you find.As a quick test, try removing the repeated SHA256 entry, rebuild the CDB, and then monitor whether the alerts persist.
Please let me know.