Hi Andrehens!
If you’re actively making changes, seeing that warning from time to time is normal.
Common causes are:
Editing files under /var/ossec/etc/shared/
Modifying agent.conf
Changing group assignments from the Dashboard
File sync in clustered setups
If it only appears when you actually change something, that’s expected behavior and nothing to worry about.
If it shows up constantly without you touching anything, then I’d check what’s modifying files under /var/ossec/etc/shared/ (timestamps usually help).