Thanks again for the response, it is not late at all!
I have run the verify-agent-conf and everything shows as OK.
I have looked at the ossec.conf at the agent, and indeed it does shown the config you showed earlier>
<localfile>
<location>Security</location>
<log_format>eventchannel</log_format>
<query>Event/System[EventID != 5145 and EventID != 5156 and EventID != 5447 and
EventID != 4656 and EventID != 4658 and EventID != 4663 and EventID != 4660 and
EventID != 4670 and EventID != 4690 and EventID != 4703 and EventID != 4907 and
EventID != 5152 and EventID != 5157]</query>
</localfile>
Shouldn't this part be equal with the one at the agent.conf in the manager, since that is the global configuration?
Lastly I see no error at ossec.log for the agent or manager, in fact these agent are sending others alerts to the manager.
Regards,
Cézar