Hello all.I have a question about WarpTools.I have generated a high resolution structure through WarpTools/M with 3D subtomogram .Now.I want to try WarpTools with 2D particles extract along with relion5.0.I use the last iteration results of M's particls.star as input of WarpTool 2D particles extraction, but the result of average.mrcs in each tilt is strange,and the results of relion5.0 refinment are almost noise in the first few iterations,and the resolution is too low ,about 17A, the map is also strange.I wonder what is wrong during the processing? Sincerely thank you for helping me! I 'd like to give you my 3D and 2D star files below:
3D:
data_
loop_
_wrpCoordinateX1 #1
_wrpCoordinateY1 #2
_wrpCoordinateZ1 #3
_wrpAngleRot1 #4
_wrpAngleTilt1 #5
_wrpAnglePsi1 #6
_wrpRandomSubset #7
_wrpSourceName #8
_wrpSourceHash #9
3484.70337 3789.01782 1472.34229 27.51451 68.81159 104.26852 2 TS_0034.tomostar 244FCRH0LradusfEil5B4V9UQlk
2D:
data_general
_rlnTomoSubTomosAre2DStacks 1
data_optics
loop_
_rlnOpticsGroup #1
_rlnOpticsGroupName #2
_rlnSphericalAberration #3
_rlnVoltage #4
_rlnTomoTiltSeriesPixelSize #5
_rlnCtfDataAreCtfPremultiplied #6
_rlnImageDimensionality #7
_rlnTomoSubtomogramBinning #8
_rlnImagePixelSize #9
_rlnImageSize #10
_rlnAmplitudeContrast #11
1 opticsGroup1 2.394 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
2 opticsGroup2 2.705 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
3 opticsGroup3 2.324 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
4 opticsGroup4 2.751 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
5 opticsGroup5 2.678 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
6 opticsGroup6 4.356 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
7 opticsGroup7 2.976 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
8 opticsGroup8 2.844 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
9 opticsGroup9 3.341 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
10 opticsGroup10 2.950 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
11 opticsGroup11 3.761 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
12 opticsGroup12 2.390 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
13 opticsGroup13 2.972 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
14 opticsGroup14 3.104 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
15 opticsGroup15 1.911 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
16 opticsGroup16 1.307 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
17 opticsGroup17 1.144 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
18 opticsGroup18 0.713 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
19 opticsGroup19 1.180 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
20 opticsGroup20 3.512 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
21 opticsGroup21 2.110 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
22 opticsGroup22 1.165 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
23 opticsGroup23 1.672 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
24 opticsGroup24 2.480 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
25 opticsGroup25 2.056 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
26 opticsGroup26 2.298 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
27 opticsGroup27 2.695 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
28 opticsGroup28 1.746 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
29 opticsGroup29 2.040 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
30 opticsGroup30 2.108 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
31 opticsGroup31 2.765 300.000 0.75500 1 2 2.00000 1.51000 216 0.070
data_particles
loop_
_rlnTomoName #1
_rlnTomoParticleId #2
_rlnCoordinateX #3
_rlnCoordinateY #4
_rlnCoordinateZ #5
_rlnAngleRot #6
_rlnAngleTilt #7
_rlnAnglePsi #8
_rlnTomoParticleName #9
_rlnOpticsGroup #10
_rlnImageName #11
_rlnOriginXAngst #12
_rlnOriginYAngst #13
_rlnOriginZAngst #14
_rlnTomoVisibleFrames #15
_rlnRandomSubset #16
TS_0034.tomostar 1 2307.750 2509.283 975.061 27.515 68.812 104.269 TS_0034/1 1 /ssd/zsy5/particleseries/TS_0034/TS_0034_1.51A_000001.mrcs 0.0 0.0 0.0 [1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1] 2