physical overlap of species

[P C]

in my case, species are fragments of a lattice (viral capsid). Because the lattice curvature is not uniform, one could define multiple sets of species each corresponding to a local shape property. This means that some individual particles from different species would physically overlap in the space of the tomogram. Am I correct to assume that M does not care of such a "clash"? (In ideal case, I would have multiple species that would together describe the complete assembly, with multiple physical overlaps within the tomogram space). 

[Alister Burt]

Overlapping density is not modelled explicitly and the low resolution information in your data will match projected maps less well because of this - despite this, M should still perform very well in these cases :-)

Sent from mobile - apologies for brevity

On Oct 6, 2025, at 18:36, P C <peter.p.c...@gmail.com> wrote:

in my case, species are fragments of a lattice (viral capsid). Because the lattice curvature is not uniform, one could define multiple sets of species each corresponding to a local shape property. This means that some individual particles from different species would physically overlap in the space of the tomogram. Am I correct to assume that M does not care of such a "clash"? (In ideal case, I would have multiple species that would together describe the complete assembly, with multiple physical overlaps within the tomogram space). 

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