Problem running fs_etomo_fiducials: wrpDose column not detected

[Moritz Kirchner]

Hello,

I am currently processing a tomography dataset and have been having problems with running the fs_etomo_fiducials protocol.

After running fs_motion_and_ctf I have created tomostar files for the project. Then I wanted to align running fs_etomo_fiducials using the following command:

WarpTools ts_etomo_fiducials --settings warp_nanobdella_sha05g6.settings --angpix 10 --fiducial_size 10 --initial_axis 84.8 --device_list 1

However, the protocol fails to process the files and the error logs (attached) show that either the wrpDose and/or wrpTilt column seems to be missing from the tomostar files. When I have a look the the corresponding tomostar file (attached) I can clearly see that the wrpDose column is present and the file has the same columns in the same order as the example given in the Quick start Guide. I am not sure why WarpTools is not detecting the column it should (which I guess is wrpDose and not wrpTilt at this point because wrpTilt is not in the example). Has anyone else had problems with this and would know of a solutions? Many thanks in advance!

Best wishes,

Moritz