Warp

hi all, I am running particle extraction with WarpTools ts_export_particles after Relion5 3D

Hi Reika, Thank you for your reply. My two datasets were collected with the exact same pixel size. I

Hello, I am currently processing a tomography dataset and have been having problems with running the

Hi Luke, Thanks for confirming! There are 2 common conventions for gain references: One takes 1/gain

Hi Giulia, The patch_size in ts_autolevel does not need to match what you used in ts_etomo_patches.

I had someone reach out to me, before the bot, and I was able to proceed in the reconstruction with

Hi Delnia, The --mask flag in ts_aretomo tells WarpTools to apply per-tilt masks when building the

Hi Dimitry, That's a great solution! Thank you so much for your help. Best, Karine On Thu, Apr 30

Dear Chris, Not the same distro/glibc version, but FWIW just yesterday I built dev38 (latest source

Hi Benedikt, The two grids live in different coordinate systems: 1) Image warp (--refine_imagewarp

Hi Dylan, This is a known bug in EstimateWeights when running with --resolve_frames. The crash occurs

Hi Spencer, Glad approach #1 is working for you. The error you see with approach #2 (manually editing

Hi Ian, You are right that the tutorial does not explain where sphere.mrc comes from -- this is an

Hello everyone, A new WarpTools development release, v2.0.0dev37, is now available. Here is

Thanks for the tips. The box size was 400, I made a typo! What seemed to work in the end was changing

Wow the respond by the bot was impressive! Also, I am not sure why you need to remove columns from

Hi everyone, Claude Code has been reliably writing most of my code lately, so I'd like to test it

(For reference, my ts_import command is as follows but I see that yours is different:) WarpTools

Hi, I just spoke with Dylan to check on his pytom scores - the problem was with the version of

Hi, Have a look at this pull request: https://github.com/warpem/warp/pull/433 It introduces a fix to

Hi everyone, I wanted to share an open position at FMI that might be of interest to this group. We

Dear Alister, Many thanks for your support and guidance to me, which has been very helpful. I wish

Hi Hamid, thanks for replying! Yes, you're completely right, you can inactivate isonet2's own

Dear Ricardo Thank you for your help. It really helps. Best, Mingyu 2026년 1월 27일 화요일 AM 12시 50분 46초

Hi Marten, Forgot to get back about this. I definitely am not familiar with all the complexities, but

Hello! My questions might be somewhat related to Hamid's question. I have several independent

Hi Maurice, I think you're right that it's not updated. I ran the AreTomo3 wrapper this

Happy New Year! What options are used in M to produce denoised maps? I am trying to apply Noise2Map

Hi Dylan, Great that you found a solution. In my case, there was an error on the cluster filesystem

Thank you for reporting back Mart, this is ugly and I'm sorry it's necessary but glad you