Warp

Hi Alister, Thank you very much for clarifying it! Reika On Fri, Sep 19, 2025 at 5:35 PM Alister Burt

Hi Dimitry, Thanks for checking on this issue. I saw that in the latest release, the EER gain

Hi all, I encountered the same issue on a cluster setup where the m-refinement would consistently

Hi all, I was wondering if I could re-open this thread about using star files generated by crYOLO as

Hi Pranav, I've always wondered about this, so it's nice to get some confirmation on the

Hi all, I'm currently refining a membrane protein using M, and wanted to crowd source some

Hi community, I'm trying to use Noise2Map to denoise my tomograms, I followed the tutorial to use

Hello, I and several others have encountered this issue with fs_motion_ctf before, although it seems

Dear all, I am currently working on template matching and have a few questions regarding the low-pass

Hi Kareem, You don't need to extract the particles as Warp has already extracted them. Just

Hi Alister, thanks for the fast response! I'll try to solve it as you recommended. Thanks again

Anyone here has success running Blush refinement with STA? I don't know whether it is possible

Hey Cai, I've had a similar bug. In my case it occurred after about 6 rounds of M refinement, and

Dear Daniel, Thank you for your comments! Some people might find your comments helpful. Yes, Warp was

Apparently, my mistake. When I create population, I used a script so it is created without the .

Hi Juleen, I've used MotionCor3 a bit, as MotionCor2 fails to run on newer GPUs. As far as I can

Hi all, I'm moving our documentation from https://warpem.github.io/warp/ to https://warpem.github

Hi Shuwen, Copying my reply from our private discussion here for visibility. I love how carefully you

Hi Delnia, Are your tilt series alignments good? Did you try playing with the contrast when opening

Hey Robert, If I was doing this I would resize the gain with nearest neighbor interpolation using

Hi Yoko, Your gain shouldn't change between every tilt series, once per data collection should be

I suspect the CTF estimation failed for this tilt series for some reason, and we don't check for

Hi all, I have been having some troubles with averaging my dataset where I kept getting noise even

Okidoki, thanks both! I'll work on it next week and perhaps when I run into trouble I'll be

Hi Alister and Pranav, Thanks for the reply and the update of warp. I will try it soon. Best Yunjie

Hello, I'm back again with a few questions after working on one of my own personal datasets.

Hey! The cc volumes are normalised so that the background is mean 0, std 1 - thresholds can be

Hi Alister Thank you for your quick reply! I will try it. One thing still unclear for me is the

Hi all, The M can update the .xml files in warp_tiltseries with improved alignments. I have a couple

Hi all, I tend to delete bad tilts directly from the tomostar, delete the tiltstack directory, then