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Install Warp on Linux:
conda create -n warp warp -c warpem -c nvidia/label/cuda-11.8.0 -c pytorch -c conda-forge
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Juan Carlos De la Concepción
, …
Kewei Gu
20
12:15 PM
Particle recentering from Relion to Warp
Thank you so much! On Monday, October 13, 2025 at 9:51:06 PM UTC+8 alist...@gmail.com wrote: Oh and
unread,
Particle recentering from Relion to Warp
Thank you so much! On Monday, October 13, 2025 at 9:51:06 PM UTC+8 alist...@gmail.com wrote: Oh and
12:15 PM
Hamidreza Rahmani
,
teg...@gmail.com
6
12:01 PM
Padding in MCore refinement
Update on this: my GPU could manage as low as 1.4A. However, I could not perform frame refinement
unread,
Padding in MCore refinement
Update on this: my GPU could manage as low as 1.4A. However, I could not perform frame refinement
12:01 PM
Wanlong Hu
,
Alister Burt
13
9:59 AM
Help troubleshooting Relion5 Refine3D crash with Warp-processed tomo particles
Hi Wanlong, I'm glad you got sorted, great work and thanks for sharing publicly! Cheers, Alister
unread,
Help troubleshooting Relion5 Refine3D crash with Warp-processed tomo particles
Hi Wanlong, I'm glad you got sorted, great work and thanks for sharing publicly! Cheers, Alister
9:59 AM
Maurice Frijns
, …
teg...@gmail.com
7
8:53 AM
Is dose weighting performed on tiltseries in WarpTools?
Hi Dimitri and Alister, Thanks for the responses, very insightful! Cheers, Maurice Op ma 13 okt 2025
unread,
Is dose weighting performed on tiltseries in WarpTools?
Hi Dimitri and Alister, Thanks for the responses, very insightful! Cheers, Maurice Op ma 13 okt 2025
8:53 AM
Irene Hu
,
Hamidreza Rahmani
2
Oct 10
cuFFT error in WarpTools template matching on large tomogram
In my case this always has been a memory issue. I got better resutls when passed the gpuids
unread,
cuFFT error in WarpTools template matching on large tomogram
In my case this always has been a memory issue. I got better resutls when passed the gpuids
Oct 10
P C
,
Alister Burt
4
Oct 10
simple transformation of a star file
Hi Peter, Probably best to just manipulate your input star file before import into M, here is my
unread,
simple transformation of a star file
Hi Peter, Probably best to just manipulate your input star file before import into M, here is my
Oct 10
P C
,
Alister Burt
2
Oct 7
physical overlap of species
Overlapping density is not modelled explicitly and the low resolution information in your data will
unread,
physical overlap of species
Overlapping density is not modelled explicitly and the low resolution information in your data will
Oct 7
P C
,
Alister Burt
3
Oct 6
refine_stageangles
thank you! On Tuesday, October 7, 2025 at 12:41:44 AM UTC+1 alist...@gmail.com wrote: Hi Peter, Your
unread,
refine_stageangles
thank you! On Tuesday, October 7, 2025 at 12:41:44 AM UTC+1 alist...@gmail.com wrote: Hi Peter, Your
Oct 6
Hamidreza Rahmani
,
Alister Burt
3
Oct 6
Removing bad tilts
Thank you for the quick response Alister. I wanted to make sure I am not missing anything here, the
unread,
Removing bad tilts
Thank you for the quick response Alister. I wanted to make sure I am not missing anything here, the
Oct 6
Matt Martinez
Oct 6
Matching Warp/Relion particles with the original Dynamo tags
Hi everyone, I'm trying to match the particles from Warp and Relion 5 refinements back to the
unread,
Matching Warp/Relion particles with the original Dynamo tags
Hi everyone, I'm trying to match the particles from Warp and Relion 5 refinements back to the
Oct 6
Grigory Tagiltsev
,
Alister Burt
2
Sep 30
step back in M
Hi Grigory, You will find a number of files in “versions” folders, at a minimum you should place
unread,
step back in M
Hi Grigory, You will find a number of files in “versions” folders, at a minimum you should place
Sep 30
Niharika Shukla
, …
Alister Burt
8
Sep 30
Defect map does not match image dimensions
Hey Niharika, Really glad you were able to use our packages to solve your issue - thanks also for
unread,
Defect map does not match image dimensions
Hey Niharika, Really glad you were able to use our packages to solve your issue - thanks also for
Sep 30
Peng Liu
,
Alister Burt
5
Sep 29
Issues with particle extraction in Warp
Hi Alister, Thank you for pointing out the concern regarding the signal. We will carefully reassess
unread,
Issues with particle extraction in Warp
Hi Alister, Thank you for pointing out the concern regarding the signal. We will carefully reassess
Sep 29
Reika Watanabe
Sep 27
How to export particles from several directories
Hi, I want to export particles from two different WarpTool directories taken at different dates. I
unread,
How to export particles from several directories
Hi, I want to export particles from two different WarpTool directories taken at different dates. I
Sep 27
Peng Liu
, …
Daniel Cai
11
Sep 25
Hi Reika, Try the: invert/no-invert flag in ts_reconstruct. Daniel Get Outlook for iOS From: warp-em@
unread,
Hi Reika, Try the: invert/no-invert flag in ts_reconstruct. Daniel Get Outlook for iOS From: warp-em@
Sep 25
Bin Tsai
, …
Juha Huiskonen
16
Sep 24
MCore error on slurm cluster gpu nodes
Hi Kain, Thanks for sharing this! In the meantime, I have modified the source code to make it run on
unread,
MCore error on slurm cluster gpu nodes
Hi Kain, Thanks for sharing this! In the meantime, I have modified the source code to make it run on
Sep 24
Lucas Morley
, …
Reika Watanabe
7
Sep 19
WarpTools ts_reconstruct map mode
Hi Alister, Thank you very much for clarifying it! Reika On Fri, Sep 19, 2025 at 5:35 PM Alister Burt
unread,
WarpTools ts_reconstruct map mode
Hi Alister, Thank you very much for clarifying it! Reika On Fri, Sep 19, 2025 at 5:35 PM Alister Burt
Sep 19
Siyu Chen
,
teg...@gmail.com
3
Sep 19
Different motion corr outcome when applying the gain reference to the same dataset using dev31 vs. dev34
Hi Dimitry, Thanks for checking on this issue. I saw that in the latest release, the EER gain
unread,
Different motion corr outcome when applying the gain reference to the same dataset using dev31 vs. dev34
Hi Dimitry, Thanks for checking on this issue. I saw that in the latest release, the EER gain
Sep 19
Kyle Messina
, …
Madeline Rollins
9
Sep 16
Cryolo and Imod Particle Picks to WarpTools
Hi all, I was wondering if I could re-open this thread about using star files generated by crYOLO as
unread,
Cryolo and Imod Particle Picks to WarpTools
Hi all, I was wondering if I could re-open this thread about using star files generated by crYOLO as
Sep 16
Doulin Shepherd
, …
Huy Bui
6
Sep 15
Importing old alignments from imod question
Hi Pranav, I've always wondered about this, so it's nice to get some confirmation on the
unread,
Importing old alignments from imod question
Hi Pranav, I've always wondered about this, so it's nice to get some confirmation on the
Sep 15
Euan William Pyle
Sep 8
Using M to Refine Membrane Proteins
Hi all, I'm currently refining a membrane protein using M, and wanted to crowd source some
unread,
Using M to Refine Membrane Proteins
Hi all, I'm currently refining a membrane protein using M, and wanted to crowd source some
Sep 8
yoko “yokomaz” maz
Sep 4
Noise2Map unhandle expection
Hi community, I'm trying to use Noise2Map to denoise my tomograms, I followed the tutorial to use
unread,
Noise2Map unhandle expection
Hi community, I'm trying to use Noise2Map to denoise my tomograms, I followed the tutorial to use
Sep 4
yoko “yokomaz” maz
,
Daniel Cai
2
Sep 1
overflow problem when using fs_motion_and_ctf
Hello, I and several others have encountered this issue with fs_motion_ctf before, although it seems
unread,
overflow problem when using fs_motion_and_ctf
Hello, I and several others have encountered this issue with fs_motion_ctf before, although it seems
Sep 1
Peng Liu
Aug 14
Questions on map rescaling and low-pass filtering for template matching
Dear all, I am currently working on template matching and have a few questions regarding the low-pass
unread,
Questions on map rescaling and low-pass filtering for template matching
Dear all, I am currently working on template matching and have a few questions regarding the low-pass
Aug 14
Kareem Farghaly
,
Juha Huiskonen
2
Aug 6
Warp-PyTom-Relion5 integration
Hi Kareem, You don't need to extract the particles as Warp has already extracted them. Just
unread,
Warp-PyTom-Relion5 integration
Hi Kareem, You don't need to extract the particles as Warp has already extracted them. Just
Aug 6
Albert Tell
,
Alister Burt
3
Aug 5
Problem with alignment
Hi Alister, thanks for the fast response! I'll try to solve it as you recommended. Thanks again
unread,
Problem with alignment
Hi Alister, thanks for the fast response! I'll try to solve it as you recommended. Thanks again
Aug 5
Huy Bui
Aug 2
STA & Blush refinement
Anyone here has success running Blush refinement with STA? I don't know whether it is possible
unread,
STA & Blush refinement
Anyone here has success running Blush refinement with STA? I don't know whether it is possible
Aug 2
Bin Tsai
,
joe dobbs
2
Jul 29
MCore --refine_tiltmovies flag cannot find frame files
Hey Cai, I've had a similar bug. In my case it occurred after about 6 rounds of M refinement, and
unread,
MCore --refine_tiltmovies flag cannot find frame files
Hey Cai, I've had a similar bug. In my case it occurred after about 6 rounds of M refinement, and
Jul 29
Reika Watanabe
, …
Daniel Cai
7
Jul 26
errors during ts_etomo_patches and ts_reconstruct
Dear Daniel, Thank you for your comments! Some people might find your comments helpful. Yes, Warp was
unread,
errors during ts_etomo_patches and ts_reconstruct
Dear Daniel, Thank you for your comments! Some people might find your comments helpful. Yes, Warp was
Jul 26
Huy Bui
2
Jul 22
M create species failed to match datasource
Apparently, my mistake. When I create population, I used a script so it is created without the .
unread,
M create species failed to match datasource
Apparently, my mistake. When I create population, I used a script so it is created without the .
Jul 22