Hi,
I have improved walkmod to solve your example. So, I have attached a library called walkmod-core-1.0.6.jar in the attached zip. This is a preliminary version of the next release. So, please, replace the walkmod-core library of your $WALKMOD_HOME/lib directory for this one before executing your example.
Then, with the added behavior, you can customize an specific suffix for the template output and one output is created per source file. The output produced has the same path than the original file but with a different suffix (by default ".result"). In your example, as you will see, I have specified a ".walkmod" suffix.
BTW, we are on holidays until 15th August. So, probably, I will have some difficulties these days to ask your questions quickly.
Thank you for using Walkmod and do not hesitate to contact us for any further problem or doubt.