Reference database

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Marcel Zandberg

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Apr 14, 2021, 10:28:22 AM4/14/21
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Hi,

I want to use the latest silva reference database for assigning taxonomy to my 16s sequences. Does anyone have a suggestion of where I can download it? I cant find a vsearch formatted one searching online.

Thanks in advance

 

Frédéric Mahé

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Apr 15, 2021, 3:51:36 AM4/15/21
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Hi, if you mean a database compatible with vsearch --sintax, that recent issue may help you:

Marcel Zandberg

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Apr 15, 2021, 5:31:37 AM4/15/21
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Thanks Frédéric Mahé,

That was exactly what I meant.

It works like a charm

Op donderdag 15 april 2021 om 09:51:36 UTC+2 schreef Frédéric Mahé:
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