Obtaining centerlines from 3D volume

Natasha

unread,

May 14, 2020, 10:02:55 PM5/14/20

to vmtk-users

Hi All,

I have a 3D volume obtained after reconstruction from the 2D images. I would like to skeletonize this 3D volume and convert to a network. I could obtain the 3D volume from tools like Fiji and 3D slicer.

However, I am not sure how to use the 3D volume obtained from other tools in VMTK. I'd also like o know if it is possible to reconstruct the 3D volume in VMTK instead of interfacing with other tools.

The input z-stack is avaialble in tiff format.

Any suggestions on how to proceed will be of great help!

Deepa

unread,

May 15, 2020, 10:40:09 PM5/15/20

to vmtk-...@googlegroups.com

Any suggestions?

--
You received this message because you are subscribed to the Google Groups "vmtk-users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to vmtk-users+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/vmtk-users/18a752b5-0c48-4c32-b9d9-ed30323c2a39%40googlegroups.com.

Andras Lasso

unread,

Jun 5, 2020, 2:59:08 PM6/5/20

to vmtk-users

You can use 3D Slicer's SlicerVMTK extension to extract centerline using a nice and convenient GUI.

Reply all

Reply to author

Forward