omp.h file not found
Ruth Fahey
Hello,
I've attached the error message I get when compiling Vicuna.
It seems to be looking for omp.h in the src directory.
This file wasn't present when I downloaded the software package.
What should I be doing here?
Thanks, from a non-coder
bash-3.2$ make
/usr/bin/g++ -fopenmp -O3 -I/Users/ruth/Desktop/VICUNA_v1.3/ncbi_cxx?12_0_0/Clang36.0-Debug64/lib/include/ncbi-tools++ -L/Users/ruth/Desktop/VICUNA_v1.3/ncbi_cxx?12_0_0/Clang36.0-Debug64/lib/lib *.cpp -o ../bin/vicuna-omp-v1.0 -lpthread -lxalgoalignnw -ltables -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi
In file included from Contig.cpp:11:
In file included from ./Contig.h:14:
./xutil.h:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
In file included from Contiger.cpp:11:
In file included from ./Contiger.h:14:
In file included from ./Parameter.h:19:
./xutil.h:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
In file included from Delegate.cpp:12:
In file included from ./Delegate.h:15:
./xutil.h:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
In file included from Diversifier.cpp:12:
In file included from ./Parameter.h:19:
./xutil.h:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
In file included from Profiler.cpp:11:
In file included from ./Profiler.h:15:
In file included from ./Parameter.h:19:
./xutil.h:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
In file included from Reducer.cpp:11:
In file included from ./Reducer.h:18:
In file included from ./ReadIndexer.h:14:
In file included from ./Parameter.h:19:
./xutil.h:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
In file included from Trimmer.cpp:11:
In file included from ./Trimmer.h:15:
./xny/seq_pair_manip.hpp:21:10: fatal error: 'algo/align/nw/nw_aligner.hpp' file
not found
#include <algo/align/nw/nw_aligner.hpp>
^
1 error generated.
make: *** [all] Error 1