V Phaser-2 Compilation Errors

[Kathryn Edenborough]

Hi all,

I am trying to use VPhaser-2 for SNP analysis but I keep running into errors during compilation.

I am using g++ supplied with Xcode for 

 /Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1

Apple LLVM version 6.0 (clang-600.0.56) (based on LLVM 3.5svn) Target: x86_64-apple-darwin14.1.0 Thread model: posix

I keep getting these errors

In file included from ./aln_manip.h:18:

./xutil.h:28:10: fatal error: 'omp.h' file not found

#include <omp.h>

         ^

1 error generated.

In file included from bam_manip.cpp:13:

./bam_manip.h:17:10: fatal error: 'api/BamReader.h' file not found

#include "api/BamReader.h"

         ^

1 error generated.

In file included from em.cpp:13:

./em.h:17:10: fatal error: 'api/BamReader.h' file not found

#include "api/BamReader.h"

         ^

1 error generated.

In file included from format.cpp:13:

./format.h:17:10: fatal error: 'api/BamReader.h' file not found

#include "api/BamReader.h"

         ^

1 error generated.

In file included from main.cpp:22:

In file included from ./Parameter.h:22:

./xutil.h:28:10: fatal error: 'omp.h' file not found

#include <omp.h>

         ^

1 error generated.

In file included from phase.cpp:13:

In file included from ./phase.h:17:

In file included from ./pileup.h:17:

In file included from ./stat_func.h:17:

./xutil.h:28:10: fatal error: 'omp.h' file not found

#include <omp.h>

         ^

1 error generated.

In file included from pileup.cpp:13:

In file included from ./pileup.h:17:

In file included from ./stat_func.h:17:

./xutil.h:28:10: fatal error: 'omp.h' file not found

#include <omp.h>

         ^

1 error generated.

In file included from stat_func.cpp:13:

In file included from ./stat_func.h:17:

./xutil.h:28:10: fatal error: 'omp.h' file not found

#include <omp.h>

         ^

1 error generated.

make: *** [all] Error 1

bash-3.2$ 

I was wondering if anyone would be able to give me some advice? I am not really that computer savvy.

Thanks

[Matthew Angel]

Was this issue ever solved? I'm getting the same error.

[rap...@peb.ufrj.br]

I have the same problem.

[Daniele Swetnam]

I'm having the same problem. Has any one fixed it out?