Hi,
I'm interested in trying out VPhaser 2, but I'm having some problems installing it. Here's the error I'm getting
VPhaser-2-02112013/src$ make
/usr/bin/g++ -fopenmp -O3 -I/srv/sw/bamtools/github_version//include/ -I/srv/sw/boost/1.47.0// -L/srv/sw/bamtools/github_version//lib *.cpp -o ../bin/variant_caller -lpthread -lbamtools
bam_manip.cpp: In function ‘void sampling(int&, int&, int&, int&, int&, const strvec_t&, int)’:
bam_manip.cpp:184:9: error: ‘INT_MAX’ was not declared in this scope
minQ = INT_MAX;
^
bam_manip.cpp:185:9: error: ‘INT_MIN’ was not declared in this scope
maxQ = INT_MIN;
^
make: *** [all] Error 1
I managed to work around this by using this helpful question
http://stackoverflow.com/questions/3233054/error-int32-max-was-not-declared-in-this-scopeThanks,
ben