Running cmd:
./bin/typing -bam test_B.sort.bam -exlbam test_non-B.sort.bam -msa db/msa/B_nuc.txt -hd 2 -o test_B_Pred
--------------------------------------------------------
Obtain (un)paired-read names in test_non-B.sort.bam
#s&p names: 23989, 383585
create file: test_B_Pred.raw.fa
Finish creating output files
Check BAM header of NHSBT_0001_B.sort.bam
[WARNING]: NHSBT_0001_B.sort.bam sort order: unsorted
Input BAM file should be sorted by queryname
8230 ref sequence(s) found; avg len = 905
1 platform(s) found: ILLUMINA
Merge PE for test_B.sort.bam
create file: test_B_Pred.unpair.fa
Finish creating output files
Finish creating output files
create file: test_B_Pred.pair.fa
Segmentation fault
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