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VFB support

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1–30 of 94

Welcome to the support forum for VirtualFlyBrain.org

Please feel free to ask any question related to our systems or any data we display, our team or other users usually be able to help.

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Jesse Pines

Jun 5

Re: Virtual Fly Brain new clients

Worth a chat? Jesse Pines PersistIQ 422 Richards St, Suite 170, Vancouver, BC V6B 2Z4 PS If you don

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Re: Virtual Fly Brain new clients

Worth a chat? Jesse Pines PersistIQ 422 Richards St, Suite 170, Vancouver, BC V6B 2Z4 PS If you don

Jun 5

jiaxin Gong, … Alex McLachlan4

Jun 2

Catmaid login inquiry

Dear Jiaxin, If you are looking to trace neurons in the L1 EM dataset the VFB instance only has those

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Catmaid login inquiry

Dear Jiaxin, If you are looking to trace neurons in the L1 EM dataset the VFB instance only has those

Jun 2

RBK RR, Clare Pilgrim4

9/24/24

Cell type research problem

Hi Rebekah, I have been able to reproduce your bug, where if an individual neuron is selected from

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Cell type research problem

Hi Rebekah, I have been able to reproduce your bug, where if an individual neuron is selected from

9/24/24

Ben Ibbott, Alex McLachlan2

9/10/24

Colouring neurons

Hi, If you combine the vfb.terms before plotting you can use get_colours_for('parents'):

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Colouring neurons

Hi, If you combine the vfb.terms before plotting you can use get_colours_for('parents'):

9/10/24

Deepanshu Singh, Robbie Court2

7/23/24

Error in downloading brain template from Virtual fly brain

Hi Deepanshu The download links are in the term info Downloads section at the bottom when you first

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Error in downloading brain template from Virtual fly brain

Hi Deepanshu The download links are in the term info Downloads section at the bottom when you first

7/23/24

Chris Barnes, Robbie Court2

7/23/24

CATMAID instances need more shared memory

I'm sorry this is still outstanding it requires an orchestration upgrade that has been due for

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CATMAID instances need more shared memory

I'm sorry this is still outstanding it requires an orchestration upgrade that has been due for

7/23/24

Andre Ferreira Castro, Alex McLachlan2

3/22/24

Issue with Image Stacks Loading from Larval TNT Volume Due to Server Decommission [Cardona Lab]

Dear Andre, Thank you for letting us know about this issue. The iav-tnt image stacks should now be

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Issue with Image Stacks Loading from Larval TNT Volume Due to Server Decommission [Cardona Lab]

Dear Andre, Thank you for letting us know about this issue. The iav-tnt image stacks should now be

3/22/24

Dmytro Rakovskyi, VFB support2

8/15/23

Natural neuron network framework

Hello Rakovskyi Dmytro, Thank you for reaching out to us and sharing your framework for natural

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Natural neuron network framework

Hello Rakovskyi Dmytro, Thank you for reaching out to us and sharing your framework for natural

8/15/23

Eva Tendero, Robbie Court2

8/15/23

Virtual Fly Brain in Data Citation Index (Web of Science)

Hi Eva, Thank you for reaching out and considering Virtual Fly Brain for inclusion in the Data

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Virtual Fly Brain in Data Citation Index (Web of Science)

Hi Eva, Thank you for reaching out and considering Virtual Fly Brain for inclusion in the Data

8/15/23

Gabi Avihsai, … Gabi A3

5/30/23

Downloading stacks

Hi Rob, Thank you very much for your helpful response. I downloaded the data as you suggested, and it

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Downloading stacks

Hi Rob, Thank you very much for your helpful response. I downloaded the data as you suggested, and it

5/30/23

Rachel Fischbein

5/13/23

Virtual-Brain.com

Hi there, I own the domain name "Virtual-Brain.com". I was planning on using the Virtual-

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Virtual-Brain.com

Hi there, I own the domain name "Virtual-Brain.com". I was planning on using the Virtual-

5/13/23

Leslie Griffith, … Rob Court8

1/18/23

problems downloading from VFB

THanks Rob- I am still having some issues but I need to play around some more. The beta version does

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problems downloading from VFB

THanks Rob- I am still having some issues but I need to play around some more. The beta version does

1/18/23

Stephan Gerhard

12/1/22

Issue with CATMAID Instance

Hello, I was just running into this issue (attached). Best regards, Stephan

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Issue with CATMAID Instance

Hello, I was just running into this issue (attached). Best regards, Stephan

12/1/22

Greg Jefferis, … David Osumi-Sutherland3

8/16/22

Very slow query for Neurons with postsynaptic terminals in antennal lobe glomerulus V

I just tried this. Took a few seconds. We should definitely work to improve, but I think performance

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Very slow query for Neurons with postsynaptic terminals in antennal lobe glomerulus V

I just tried this. Took a few seconds. We should definitely work to improve, but I think performance

8/16/22

Greg Jefferis, David Osumi-Sutherland2

8/7/22

autocomplete

Hi Greg, I agree not ideal. My group is working on autosuggest tuning on other projects, so seems

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autocomplete

Hi Greg, I agree not ideal. My group is working on autosuggest tuning on other projects, so seems

8/7/22

Gavin Schelske, Alex McLachlan2

6/7/22

Joining Future Workshops

Hi Gavin, Thanks for contacting us. We have added you to our list of potential future attendees and

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Joining Future Workshops

Hi Gavin, Thanks for contacting us. We have added you to our list of potential future attendees and

6/7/22

flylab hanyang, S Otsuna2

11/19/21

Searching lines with ROI.

Hi Hayun, Neuronbridge has a neuron search function 1. click "Color Depth Search results"

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Searching lines with ROI.

Hi Hayun, Neuronbridge has a neuron search function 1. click "Color Depth Search results"

11/19/21

Sindhuja Gowrisankaran, jefferis2

4/21/21

finding driver lines

Hi Sindhuja, I don't think anyone at VFB has special expertise re this question so you will

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finding driver lines

Hi Sindhuja, I don't think anyone at VFB has special expertise re this question so you will

4/21/21

miri...@gmail.com, Greg Jefferis3

2/24/21

Q&A

How to find BodyID for each exact neuron within a driver?

By the way you may also want to take a look at the worked examples that Alex Bates has put together

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Q&A

How to find BodyID for each exact neuron within a driver?

By the way you may also want to take a look at the worked examples that Alex Bates has put together

2/24/21

陳文傑, miri...@gmail.com2

2/24/21

I haven't received follow-up information or confirmation e-mail after I registered the "Hacking the connectome Workshop"

I received an email on 11/02 saying I did not get a place so perhaps as you have not heard anything

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I haven't received follow-up information or confirmation e-mail after I registered the "Hacking the connectome Workshop"

I received an email on 11/02 saying I did not get a place so perhaps as you have not heard anything

2/24/21

Dr Gregory Jefferis, … Rob Court4

2/2/21

Re: Inquiry regarding NBLAST on-the-fly

Thank you very much, Rob. That's great. Just a note for any future readers that Takuro also

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Re: Inquiry regarding NBLAST on-the-fly

Thank you very much, Rob. That's great. Just a note for any future readers that Takuro also

2/2/21

Communication External

8/4/20

Search for VT gal4 lines based on neuron skeletons

Hello! I am trying to identify genetic drivers that label my neuron of interest. So far, I have been

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Search for VT gal4 lines based on neuron skeletons

Hello! I am trying to identify genetic drivers that label my neuron of interest. So far, I have been

8/4/20

Abbie

5/27/20

Q&A

Viewing many neurons on the updated site

To whoever can help, I have had some trouble navigating the newly updated website and was wondering

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Q&A

Viewing many neurons on the updated site

To whoever can help, I have had some trouble navigating the newly updated website and was wondering

5/27/20

Christina May, Greg Jefferis2

4/15/20

Glitch in MB109B in 3D scene

Dear Christina, Rob Court in Edinburgh will probably need to pick this up, but I think that the stack

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Glitch in MB109B in 3D scene

Dear Christina, Rob Court in Edinburgh will probably need to pick this up, but I think that the stack

4/15/20

bys...@gmail.com, Marta Costa3

1/10/20

Q&A

can I donwload the anatomical masks

Dear Wenbin, Just to add that if you use python and not R, you can use the package pymaid (developed

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Q&A

can I donwload the anatomical masks

Dear Wenbin, Just to add that if you use python and not R, you can use the package pymaid (developed

1/10/20

David S. Deutsch, … David Osumi-Sutherland3

12/6/19

Curation in VFB

Hi Dudi, sup...@virtualflybrain.org is potentially externally visible. Happy to switch to direct

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Curation in VFB

Hi Dudi, sup...@virtualflybrain.org is potentially externally visible. Happy to switch to direct

12/6/19

stau...@staff.uni-marburg.de

11/7/19

Link to virtual flybrain

Dear ladies and gentlemen, the group of Prof. Homberg (Marburg, Germany) is working on a new website

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Link to virtual flybrain

Dear ladies and gentlemen, the group of Prof. Homberg (Marburg, Germany) is working on a new website

11/7/19

antonyboucardjr, Robbie Court2

9/27/19

Permission to use images adapted from Virtualflybrain.org

Hi Anthony, All images on VFB are available under various open source licenses but all require

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Permission to use images adapted from Virtualflybrain.org

Hi Anthony, All images on VFB are available under various open source licenses but all require

9/27/19

yche...@ucr.edu, Robbie Court2

9/27/19

Q&A

Permission to use the image from virtual fly brain

Thanks for using VFB. Milyaev is the correct reference for VFB. The VT line images are available

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Q&A

Permission to use the image from virtual fly brain

Thanks for using VFB. Milyaev is the correct reference for VFB. The VT line images are available

9/27/19

7/30/19

A Quick Question About Your Resource Page

Hey, I was searching for some information on brain health this morning, when I came across your

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A Quick Question About Your Resource Page

Hey, I was searching for some information on brain health this morning, when I came across your

7/30/19