VESTA does not allow you to calculate electron densities from first principles. It can be used to calculate electron densities from structure factor data, for example from X-ray diffraction data, though I've not used that functionality.
I've had quite a bit of success using a density functional theory (DFT) code called SIESTA to calculate electronic structures from first principles. Perhaps that sort of approach would be suitable for your materials. In that case, I've found VESTA very useful for displaying the calculated densities as volumetric data and easily visualising them.
Philip