Accept several BAMs for the same VCF file

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raqs...@gmail.com

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Nov 12, 2018, 10:55:23 AM11/12/18
to verifyBamID
Hi,

I was wondering if it is possible accept several input BAM files for the same reference VCF file (--freemix mode) or to add a new feature to be (hack a new way of being) able to run verifyBamID 
Therefore, reducing the time consuming process of reading the same VCF file for each BAM.

I'm currently running this command line: verifyBamID --vcf ${VCF} --bam ${BAM} --out ${OUT} --verbose --ignoreRG --site --minQ 20

Best regards,
Raquel

Hyun Min Kang

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Nov 13, 2018, 11:46:06 PM11/13/18
to verif...@googlegroups.com
Raquel -- VCF reading time is trivial. I don't think this will be useful much and won't be supported.

Hyun.

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