Hi All, I just made a big release of vcfanno.
Most importantly, it has proper support for multiallelics. So you can
annotate files that
have not been decomposed with files that have not been decomposed and
it will do the right thing (tm).
Details of that are here:
http://brentp.github.io/vcfanno/#multi-allelics
Just use op="self" for any annotation field that has Number=A in the
header and vcfanno will pull the correct value.
thanks for those who reported issues and made feature requests. Please
let me know any issues.
https://github.com/brentp/vcfanno/releases/tag/v0.2.0
-Brent