Re: Spring Salad hangs after a while
Loew,Leslie M.
Hi Soumik,
The first thing I would suggest is to download a fresh version of SpringSaLaD. Let us know if that solves the problem.
We have actually made some upgrades recently, so it would be good for anyone using SpringSaLaD to install the latest version 2.3.4 at https://vcell.org/ssalad.
Best,
Les
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On 8/13/24, 12:51 AM, "Soumik Ghosh" <soumi...@gmail.com <mailto:soumi...@gmail.com>> wrote:
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Hello,
I've recently been using Spring Salad to model some basic mechanisms. But I=
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run into probelms that Spring salad silently just silently hangs. It shows=
=20
"running" on the simulation manager, but i can see it is using no resources=
=20
and not writing any file to the data folder.
Have any of you run into this issue? I have tried both on Windows and=20
Linux. If its running into some errors is there a verbose mode or something=
=20
so it can output the error somewhere so I can figure out what's wrong?=20
Currently I have to use my cpu load change coupled with no new file writes=
=20
for x amount of time to know that the simulation has silently hung.
I am modelling a system with 40-80 molecules with 7-8 sites each in a box=
=20
of 40x40x40 a total simulation time of 1 second. It currently has 4=20
transition, 8 allosteric and 10 binding reactions.
Best,
Soumik
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Hello,<div><br /></div><div>I've recently been using Spring Salad to model =
some basic mechanisms. But I run into probelms that Spring salad silently j=
ust silently hangs. It shows "running" on the simulation manager, but i can=
see it is using no resources and not writing any file to the data folder.<=
/div><div><br /></div><div>Have any of you run into this issue? I have trie=
d both on Windows and Linux. If its running into some errors is there a ver=
bose mode or something so it can output the error somewhere so I can figure=
out what's wrong? Currently I have to use my cpu load change coupled with =
no new file writes for x amount of time to know that the simulation has sil=
ently hung.</div><div><br /></div><div>I am modelling a system with 40-80 m=
olecules with 7-8 sites each in a box of 40x40x40 a total simulation time o=
f 1 second. It currently has 4 transition, 8 allosteric and 10 binding reac=
tions.</div><div><br /></div><div>Best,<br />Soumik</div>
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