VARNA.RNA

1–16 of 16

Welcome to VARNA's users list.

Please don't hesitate to ask for new features, or report unusual behaviors (bugs).

VARNA Dev Team.

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Mungo Carstairs, Yann Ponty3

6/22/15

Save/load session bug in 3.92

Thanks Yann, that does indeed seem to fix these issues. The quick response is appreciated. The only

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Save/load session bug in 3.92

Thanks Yann, that does indeed seem to fix these issues. The quick response is appreciated. The only

6/22/15

Ginnie Nguyen, Yann Ponty3

5/16/13

Zoom in/out feature and grid option?

As I try to draw my structure by Varna, I need to rearrange the base paring parallel to each other

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Zoom in/out feature and grid option?

As I try to draw my structure by Varna, I need to rearrange the base paring parallel to each other

5/16/13

jiashiun, Yann Ponty2

12/21/11

question on base pair style

Dear Jiashiun, Thanks for reporting this. Actually, there is a bit of slack in the Leontis/Westhof

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question on base pair style

Dear Jiashiun, Thanks for reporting this. Actually, there is a bit of slack in the Leontis/Westhof

12/21/11

Tomasz Żok, Yann Ponty2

10/20/11

Overlap of image for big structures

Hi Tomasz, Theoretically speaking, there is simply no way to avoid overlapping layouts in general. In

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Overlap of image for big structures

Hi Tomasz, Theoretically speaking, there is simply no way to avoid overlapping layouts in general. In

10/20/11

Kit Menlove, Yann Ponty2

9/15/11

Trouble Opening Files

Hi Kit, Thanks a lot for helping us improve VARNA! I think I've never seen this one before, could

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Trouble Opening Files

Hi Kit, Thanks a lot for helping us improve VARNA! I think I've never seen this one before, could

9/15/11

Hervé Ménager

1/28/11

The VARNA applet is now available in the Mobyle Pasteur website

Dear VARNA users, This e-mail is both an announcement and a call for comments. We have installed the

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The VARNA applet is now available in the Mobyle Pasteur website

Dear VARNA users, This e-mail is both an announcement and a call for comments. We have installed the

1/28/11

11/26/10

VARNA Command Line Options

Ah thank you so much Yann! When I read on the website that it needed a list my brain automatically

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VARNA Command Line Options

Ah thank you so much Yann! When I read on the website that it needed a list my brain automatically

11/26/10

Andrew Uzilov, Yann Ponty3

11/11/10

automate creation of size legends for chemical/enzymatic probing glyphs

Hi Yann.... The issues you are describing with the legend positioning --- they affect the heatmap

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automate creation of size legends for chemical/enzymatic probing glyphs

Hi Yann.... The issues you are describing with the legend positioning --- they affect the heatmap

11/11/10

Andrew Uzilov, Yann Ponty2

11/11/10

ability to add pseudouridine and methylated positions

At the risk of repeating myself, this is again an excellent idea. However, this is also really tricky

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ability to add pseudouridine and methylated positions

At the risk of repeating myself, this is again an excellent idea. However, this is also really tricky

11/11/10

Andrew Uzilov, Yann Ponty3

11/11/10

disable zoom/pan when dragging helices

(Reposting because the previous post might bounce --- wrong account used.) The video is quite helpful

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disable zoom/pan when dragging helices

(Reposting because the previous post might bounce --- wrong account used.) The video is quite helpful

11/11/10

jcg, Yann Ponty2

7/7/10

-flat option in VARNA command line

Hi Joao, This is due a glitch in the specs, already pointed out by Andrew at http://groups.google.fr/

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-flat option in VARNA command line

Hi Joao, This is due a glitch in the specs, already pointed out by Andrew at http://groups.google.fr/

7/7/10

7/7/10

Offline drawing using command line

Dear Joao, To draw structures automatically, one doe not need to go into the code, but should rather

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Offline drawing using command line

Dear Joao, To draw structures automatically, one doe not need to go into the code, but should rather

7/7/10

Andrew Uzilov, Yann Ponty7

5/18/10

bug or misuse? "flat" param does not work

Thanks Yann! And thank you for making this excellent tool! I have been hacking away at various ways

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bug or misuse? "flat" param does not work

Thanks Yann! And thank you for making this excellent tool! I have been hacking away at various ways

5/18/10

Andrew Uzilov, Yann Ponty5

5/17/10

how to control distance between base pairs?

On Mon, May 17, 2010 at 4:10 PM, Yann Ponty <yann....@gmail.com> wrote: > >> Perhaps

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how to control distance between base pairs?

On Mon, May 17, 2010 at 4:10 PM, Yann Ponty <yann....@gmail.com> wrote: > >> Perhaps

5/17/10

herve, Yann Ponty3

5/17/10

RNAML file request

Problem was due to the RNAML produced by the UnaFold software (lots of ways to describe secondary

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RNAML file request

Problem was due to the RNAML produced by the UnaFold software (lots of ways to describe secondary

5/17/10

11/17/09

Welcome to VARNA group

Feel free to request new features ans/or submit bugs here.

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Welcome to VARNA group

Feel free to request new features ans/or submit bugs here.

11/17/09

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