Running error

[Christian Probst]

Hi,

I am using varid 1.0.7f and I have received the following error. I
have a very small reference file, and the number of generated reads is
very large, so I think that could be the cause.

Thanks in advance and here is the code:

varid_exec -r /solid/reference/Pool02.fasta -a
Seq01_Pool002_SHRiMP.sam -o Seq01_Pool002_SNPs.pb --threads 4
Using 4 threads

- alignments: Seq01_Pool002_SHRiMP.sam
- ref-file: /solid/reference/Pool02.fasta

Detected:
Pool02:40146 nt
Splitting reads
Total reads: 1124890
Used reads: 1124890
Done: in: 15.274 secs
------------------------------
Processing fasta entry : Pool02 - 40146bp
Processing group number : 1
Loading reads ...
Done in 14.582 secs
Aligning reads ...
There are 598 potential insert sites
Done in: 5.698 secs
Starting VARiD Algorithm
Building Transition Matrix...
Done in: 0.081 secs
Trying to allocate 52967200 bytes...
covmaps built in: 18.856 secs, Used reads in the covmaps:
1124890/1124890, Skipped for 0 index:0
Computing emissions...
SNP penalty 1.000000e-03, log -6.907755e+00
Done in: 47.723 secs,
fwd algo done in: 40.533 secs
bwd algo done in: 25.573 secs
DONE VARiD Algorithm & prediction in: 137.784 secs
Starting primary prediction... Done in: 14.769 secs
<nuc2col.c:143> assertion: (outcol_tmp.data[i] != (VA_UINT8)-1)
failed, Last errno=34
<run_wrap.c:781> varid_exec exiting...
<run_wrap.c:784> varid_exec exited