Re: Issue 110 in utgb: Test code for WIGDatabaseReader

[ut...@googlecode.com]

Updates:
Summary: Test code for WIGDatabaseReader
Labels: -Milestone-utgb-toolkit-1.4 -AffectedVersion-1.4
Milestone-utgb-toolkit-1.5 AffectedVersion-1.5.0-SNAPSHOT

Comment #1 on issue 110 by taroleo: Test code for WIGDatabaseReader
http://code.google.com/p/utgb/issues/detail?id=110

Recent changes to WIGDatabaseReader, which add several columns
(min/max/avg/mean) to SQLite database schema of WIG data, might be a cause
of a bug when retrieving graph data in a specified range. Currently, I am
suffering the problem of strange display positions of WIG graph data when
multiple WIGTracks are used in a view definition file.

Add test codes for the methods in WIGDatabaseReader class to verify that
the WIG database is created properly, and also to ensure that data
retrieval methods (e.g., getWIGData, getCompactWIGData, etc.) return
correct results.

If WIGDatabaseReader reads the data correctly, the display position problem
is caused by the other classes, e.g., GWTGenomeCanvas.

[ut...@googlecode.com]

Comment #2 on issue 110 by taroleo: Test code for WIGDatabaseReader
http://code.google.com/p/utgb/issues/detail?id=110

ReadDepth and SAM2WigConverter might be the cause of the problem.

[ut...@googlecode.com]

Updates:
Status: Fixed
Labels: -FixedVersion-NA FixedVersion-1.5.0-SNAPSHOT

Comment #3 on issue 110 by taroleo: Test code for WIGDatabaseReader
http://code.google.com/p/utgb/issues/detail?id=110

Fixed in Revision a702a2f647b3