qstat: command not found

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ka bou

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Feb 27, 2019, 10:02:14 AM2/27/19
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Dear Developers,

I'm facing a problem with the local submission, I have run a calculation with the example EX01-3D_Si_vasp
 USPEX creates the different structures and launch VASP after a VASP calculation is done, the following is not launch.
 in the end, I found this error:
 qstat: command not found ( i think that qstat is not installed on slurm cluster system that I'm using)
 is there any equivalent command.

 

EX01-3D_Si_vasp$./EX01-3D_Si_vasp.sh
Error using python_uspex (line 91)
System error: /bin/sh: qstat: command not found
Traceback (most recent call last):
  File "/home/uspex_work/EX01-3D_Si_vasp/Submission/checkStatus_local.py", line 47, in <module>
    isDone = checkStatus_local(jobID=args.jobID)
  File "/home/uspex_work/EX01-3D_Si_vasp/Submission/checkStatus_local.py", line 32, in checkStatus_locl
    output = unicode(check_output(u'qstat {}'.format(jobID), shell=True))
  File "/home/vm/pkg/miniconda2/lib/python2.7/subprocess.py", line 223, in check_output
    raise CalledProcessError(retcode, cmd, output=output)
subprocess.CalledProcessError: Command 'qstat 10991' returned non-zero exit status 127

Command executed: python -W ignore /home/uspex_work/EX01-3D_Si_vasp/Submission/checkStatus_local.py  - 10991
Error in checkStatusC (line 40)


Error in ReadJobs (line 21)


Error in LocalRelaxation (line 20)


Error in EA_300 (line 13)


Error in Start (line 52)


Error in USPEX (line 39)
MATLAB:python:ExecutionError


best regards

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