USPEX 10.3: EX1: files not found

143 views
Skip to first unread message

stefan.bec...@gmail.com

unread,
Mar 13, 2019, 10:50:44 AM3/13/19
to USPEX
Hello

To test the installation of USPEX 10.3, I tried EX1 (using VASP) using the provided script EX01-3D_Si_vasp.sh.

From time to time, it shows: 

Warning: File 'Fitness_vs_N.pdf' not found.
> In makeFigures (line 41)
  In WriteGenerationOutput_300 (line 26)
  In EA_300 (line 34)
  In Start (line 52)
  In USPEX (line 39)

Fitness_vs_N.pdf is the only file not present in results1/ or reference/.
Other files shown as "not found" are E_series.pdf, Energy_vs_N.pdf, Enthalpy_vs_Volume.pdf and Variation-Operators.pdf, but these four files are present in both results1/ and reference/ ...
What can be done about it?



At a given moment, it shows 

USPEX IS DONE!


But after 300 sec of sleep (part of EX01-3D_Si_vasp.sh), USPEX restarts and shows:

Warning: File 'POSCAR' not found.
> In USPEXDone (line 4)
  In Start (line 60)
  In USPEX (line 39)
Warning: File 'POSCAR_order' not found.
> In USPEXDone (line 5)
  In Start (line 60)
  In USPEX (line 39)
USPEX IS DONE!

and this goes on forever, every 300 sec, until I stopped the script. What's wrong with the missing POSCAR and POSCAR_order and what can be done about it such that the script actually stops when it says "USPEX IS DONE!"


Thanks!
Stefan

Зэд Икс

unread,
Mar 14, 2019, 7:04:54 AM3/14/19
to USPEX
Hi,
The warnings are not important you can ignore them.
This is your script that runs USPEX over and over again. You must kill the script manually or write a script that kills itself when USPEX is done.

The simple example is like: 
while [ ! -f ./USPEX_IS_DONE ]
do
  USPEX -r >>  log ; sleep 300
done

stefan.bec...@gmail.com

unread,
Mar 14, 2019, 7:19:42 AM3/14/19
to USPEX
Hello

Thanks for the suggestion!

Kind regards
Stefan
Reply all
Reply to author
Forward
0 new messages