<< error generating Special Quasi Random Structures >>

249 views
Skip to first unread message

I. Camps

unread,
Feb 4, 2013, 8:51:45 AM2/4/13
to uspex
Hello USPEXers,

I am trying to generate Special Quasi Random Structures - SQRS (from example T18_order_without_relaxation, USPEX 9.2.7)

The system I am trying to simulate is TixCo(1-x)O2. In this case I need a SQRS of 96 atoms with 16 atoms of Ti, 16 atoms of Co (equivalent to x=0.5) and 64 atoms of O.

The error was:
"Could not generate a structure after 30000 tries or 15 minutes. Please check the input files. The calculation has to stop."

Any ideas?

Best regards,

Camps
INPUT.txt

huy pham

unread,
Feb 4, 2013, 8:55:18 AM2/4/13
to ica...@gmail.com, uspex
Hi,

In your INPUT file, the valence of O should be 2 instead of -2 I think,

Cheers,
Huy

--
You received this message because you are subscribed to the Google Groups "USPEX" group.
To unsubscribe from this group and stop receiving emails from it, send an email to uspex+un...@googlegroups.com.
For more options, visit https://groups.google.com/groups/opt_out.
 
 



--
Pham Cong Huy
PhD student, Condensed Matter Section
SISSA International School for Advanced Studies
Via Bonomea 265, I- 34136, Trieste, Italy
E-mail:
pchu...@gmail.com
cp...@sissa.it

huy pham

unread,
Feb 4, 2013, 8:57:32 AM2/4/13
to ica...@gmail.com, uspex
IonDistances should not be
1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5
Use
1.5 1.5 1.5 0.0 1.5 1.5 0.0 0.0 1.5

Artem Oganov

unread,
Feb 4, 2013, 9:27:55 AM2/4/13
to pchu...@gmail.com, ica...@gmail.com, uspex
Right - valence is always positive, so "2" (not "-2" which would be charge).
Also, in Camps's INPUT.txt there is a line
% 1090
that needs to be removed.
 
Most importantly - for generating SQS, you need an initial (ordered or somewhat disordered) supercell in Seeds/POSCARS.
 
Cordially yours,

Artem
******************
Prof. Artem R. Oganov
Department of Geosciences and Department of Physics and Astronomy, State University of New York, Stony Brook, NY 11794-2100

Phones: (631)-632-1429 (office), x1449 (lab), x8241 (admin. assistant). Fax (631) 632 8240.
E-mail artem....@sunysb.edu. Web-site: http://mysbfiles.stonybrook.edu/~aoganov
******************
NEWS: Evolutionary metadynamics: a novel method to predict crystal structures. Cryst. Eng. Comm. 14, 3596-3601. (2012).
******************
NEWS: Evolutionary crystal structure prediction enabled for molecular crystals: Acta Cryst. B68, 215-226 (2012). [Feature Article]
******************
NEWS: Structure of "superhard graphite" established: Scientific Reports 2, 471 (2012).
******************
NEWS: Structure of magnesium borohydride established: Phys. Rev. Lett. 109, 245504 (2012).
******************
NEWS: Stable xenon oxides predicted: Nature Chemistry 5, 61-65 (2013).
******************
IUCr Commission on Crystallography of Materials: http://www.iucr.org/iucr/commissions/crystallography-of-material

I. Camps

unread,
Feb 7, 2013, 6:54:53 AM2/7/13
to Artem Oganov, pchu...@gmail.com, uspex
Hello,

First of all: thank you very much for the suggestions (Prof. Artem and Huy). Finally, I got the SQS!

But I have some questions. For my system (16 Ti atoms, 16 Co atoms and 64 O atoms):

-) I had to decrease the ion distance to almost zero to generate the SQS

0.05 0.05 0.05
0.0 0.05 0.05
0.0 0.0 0.05

Is this normal? I tried with 1.5, 1.0, 0.5, 0.25, but always get the complains

-) From the results I had two files: POSCAR and POSCAR_order. In the POSCAR_order, what is the meaning of the fourth number that appear at the end of each line containing the coordinates? Ex:
POSCAR: 0.25 0.75 0.25
POSCAR_order: 0.25 0.75 0.25 2.6479

-) Is there any tool (or hack) that "convert" the POSCAR output to a file format containing the atoms and the crystal structure information?

Best regards,

Camps
Reply all
Reply to author
Forward
0 new messages