Hi Bruno,
In Pajek, partition numbers control the color of nodes, but these can be overridden. Here's a list of Pajek's colors, which are based on Crayola crayon colors:
http://vlado.fmf.uni-lj.si/pub/networks/pajek/doc/Crayola.pdf
Page 60 in the Pajek Reference shows how to use colors by name to control the vertex content and border colors, and also edge colors:
http://vlado.fmf.uni-lj.si/pub/networks/pajek/doc/pajekman.pdf
Every partition has a default color, but I haven't found a table that shows the colors names for each partition by number.
The generated partition URLLevels identifies the level of each URL in the network - partition 0 for the root node, 1 for the outlinks from the root, 2 for the outlinks from the first-level outlink pages, and so on to whatever depth you specified when generating the project file. If you select the URLLevels partition in the first Partitions dropdown and either the directed or undirected network in the first Network dropdown, then choose Draw-Partition from the Draw menu, you will get a network with the nodes color-coded by level.
I'm not sure if this answers your question, but hopefully it's a step in the right direction.
BTW, there is a Pajek mailing list that may be a better source of information on how to do things with Pajek:
http://pajek.imfm.si/doku.php?id=maillistPajek's authors are quick to respond to most messages on the list.
Cheers,
Dale
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Dale A. Hunscher, MSI
Sr. Business Systems Analyst
University of Michigan Medical School
734-678-5178