Failure on installation of UPC++ to Frontera

[LeAnn Lindsey]

Hello.  I am trying to install UPC++ in order to run MetaHipMer and the installation process went fine, no errors, but I had an error when I tested the install.  I would appreciate any help you can give me. 

Thank you,

LeAnn Lindsey

c202-029[clx](55)$ gmake tests-clean test_install

Removing tests for smp.

Removing tests for udp.

Removing tests for mpi.

Removing tests for ibv.

Testing UPC++ installation at /home1/08002/tg873019/src/upcxx_build...

========

Compiling for UPCXX_CODEMODE=debug UPCXX_THREADMODE=seq

========

Compiling test-hello_upcxx-udp                                         SUCCESS

+ env UPCXX_CODEMODE=debug UPCXX_THREADMODE=seq UPCXX_NETWORK=ibv /home1/08002/tg873019/src/upcxx_build/bin/upcxx /home1/08002/tg873019/src/upcxx-2021.3.0/test/hello_upcxx.cpp -o test-hello_upcxx-ibv

g++: error: unrecognized command line option ‘-wd177’

g++: error: unrecognized command line option ‘-wd279’

g++: error: unrecognized command line option ‘-wd1572’

Compiling test-hello_upcxx-ibv                                         FAILED

Compiling test-hello_upcxx-smp                                         SUCCESS

Result reports: /home1/08002/tg873019/src/upcxx_build/test-results/c202-029.frontera.tacc.utexas.edu_2021-09-16_16:22:05

FAILED to compile 1 of 3 tests

gmake[2]: *** [do-tests] Error 1

********

UPC++ test_install failed. Please report the ENTIRE log above to: up...@googlegroups.com

********

gmake[2]: *** [failure] Error 1

gmake[1]: *** [test_install] Error 1

gmake: *** [test_install] Error 2

c202-029[clx](56)$ 

[Paul H. Hargrove]

LeAnn,

The messages you report show that the `g++` compiler has been given some flags I recognize as specific to Intel's C++ compiler, `icpc`.

This most likely means that you have an `mpicxx` which used `icpc` when UPC++ was configured and/or built, but is now using `g++`.

I would hope that having the same environment modules loaded as when you built MetaHipMer would be sufficient.

However, since I am not familiar with the environment modules on Frontera, I cannot make specific recommendations.

If you cannot determine a proper set of environment modules to load, setting `OMPI_CXX=icpc` in your environment might achieve the desired outcome.

However, that is fragile in other ways and should be considered a last resort.

-Paul

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[LeAnn Lindsey]

Thanks, I changed my modules by adding gcc/9.1.0 and tried again and now I get this error.

c202-033[clx](123)$ make tests-clean test_install

Removing tests for smp.

Removing tests for udp.

Removing tests for mpi.

Removing tests for ibv.

Testing UPC++ installation at /home1/08002/tg873019/src/upcxx_build...

========

Compiling for UPCXX_CODEMODE=debug UPCXX_THREADMODE=seq

========

Compiling test-hello_upcxx-udp                                         SUCCESS

+ env UPCXX_CODEMODE=debug UPCXX_THREADMODE=seq UPCXX_NETWORK=ibv /home1/08002/tg873019/src/upcxx_build/bin/upcxx /home1/08002/tg873019/src/upcxx-2021.3.0/test/hello_upcxx.cpp -o test-hello_upcxx-ibv

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/upcxx_build/gasnet.debug/lib/libgasnet-ibv-seq.a(gasnet_bootstrap_mpi-SEQ.o): in function `gasneti_bootstrapInit_mpi':

/home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:75: undefined reference to `MPI_Initialized'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:112: undefined reference to `MPI_Query_thread'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:122: undefined reference to `MPI_Init_thread'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:142: undefined reference to `MPI_Comm_group'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:144: undefined reference to `MPI_Comm_create'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:146: undefined reference to `MPI_Group_free'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:150: undefined reference to `MPI_Comm_size'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:155: undefined reference to `MPI_Comm_rank'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/upcxx_build/gasnet.debug/lib/libgasnet-ibv-seq.a(gasnet_bootstrap_mpi-SEQ.o): in function `bootstrapFini':

/home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:172: undefined reference to `MPI_Finalized'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:177: undefined reference to `MPI_Comm_free'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:186: undefined reference to `MPI_Finalize'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/upcxx_build/gasnet.debug/lib/libgasnet-ibv-seq.a(gasnet_bootstrap_mpi-SEQ.o): in function `bootstrapAbort':

/home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:191: undefined reference to `MPI_Abort'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/upcxx_build/gasnet.debug/lib/libgasnet-ibv-seq.a(gasnet_bootstrap_mpi-SEQ.o): in function `bootstrapBarrier':

/home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:201: undefined reference to `MPI_Barrier'

/opt/apps/gcc/9.1.0/bin/ld: /home1/08002/tg873019/src/upcxx_build/gasnet.debug/lib/libgasnet-ibv-seq.a(gasnet_bootstrap_mpi-SEQ.o): in function `bootstrapExchange':

/home1/08002/tg873019/src/bld/GASNet-2021.3.0/other/mpi-spawner/gasnet_bootstrap_mpi.c:219: undefined reference to `MPI_Allgather'

Compiling test-hello_upcxx-ibv                                         FAILED

Compiling test-hello_upcxx-smp                                         SUCCESS

Result reports: /home1/08002/tg873019/src/test-results/c202-033.frontera.tacc.utexas.edu_2021-09-17_10:31:19

FAILED to compile 1 of 3 tests

make[2]: *** [do-tests] Error 1

********

UPC++ test_install failed. Please report the ENTIRE log above to: up...@googlegroups.com

********

make[2]: *** [failure] Error 1

make[1]: *** [test_install] Error 1

make: *** [test_install] Error 2

c202-033[clx](124)$ module list

Currently Loaded Modules:

  1) git/2.24.1      3) cmake/3.20.3   5) hwloc/1.11.12   7) TACC        9) python3/3.8.2

  2) autotools/1.2   4) pmix/3.1.4     6) xalt/2.10.27    8) gcc/9.1.0  10) impi/19.0.9

 

Any direction would be very helpful.  I don’t have much experience with this, since my background is in biology and I am just hoping to run Metahipmer.

LeAnn