Hey Steve
 ... yeah, depending on how much of a mess you want to make, digging 
around in the transom gelcoat, or, now, likely paint & fill (I 
myself would be a litte nervous at what might be found ... you have to 
ask yourself, why would anyone fill-in and obliterate that #? ... maybe 
best to leave sleeping dogs lie ... ) is one way to find the # ... can 
you see the outline of the long, narrow rectangular inset where the # is
 located? ... that would isolate any detective work you may undertake to
 the proper area at least ... there may be a non-destructive test method
 (ultrasound?  or ?) to 'see' the #'s below the fill, however, you'll 
have to research that out yourself ... if it's important enough to you 
... I'm surpised you have not found the HIN suffix anywhere ... have you
 lifted the Master Strm. center queen plywood platform panels (2) and 
examined the undersides of the panels?
And,
 it sounds like your wiring ambitions / requirements outstrip mine by a 
fairly tall margin ... my thought is always to preserve a more original 
example of my DCS ... wiring included, with appropriate repairs and 
upgrades of course.  The wiring under my flybridge cowling has seen a 
few butchers in its' day to be sure, however, by and large, it is 
salvageable and I have been able to repair / neaten it up to my 
satisfaction.
I've posted a number of 
threads here seeking help with various wiring and other matters ... 
maybe search posts made by me and see if anything jumps out at you ... 
i.e. the original (to my vessel) wiring schematics I've posted and the 
original alarm wiring / alarm modules, ect. (the latter that I've since 
figured out how to repair by replicating the rectifier diode-populated 
modules [correct replacement value rectifier diodes identified as to 
part numbers and source(s), yet to be procured / built / installed] 
mounted to the inside of the flybridge Fwd cowl).
Good luck!
Kevin Mc