Mouse brain segmentation wrong

[Kai Chuang]

Hi Frank, I tried on a T2w mouse brain data. The cortex and cerebellum seemed fine, but not other regions, eg, striatum and thalamus are merged as one. Midbrain and WM are also mixed as one. In particular, CSF is not separated. I've uploaded this data. Please have a look when you got time. Thanks.

[Frank Yeh]

Hi Kai,

    I will see what I can do to improve it.

Best,

Frank

On Tue, Oct 3, 2023 at 12:58 AM Kai Chuang <kaic...@gmail.com> wrote:

Hi Frank, I tried on a T2w mouse brain data. The cortex and cerebellum seemed fine, but not other regions, eg, striatum and thalamus are merged as one. Midbrain and WM are also mixed as one. In particular, CSF is not separated. I've uploaded this data. Please have a look when you got time. Thanks.

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