Re: Modview V2012
Eden Alvardo
Modview v2012: A User-Friendly Program for Exploring Biomolecule Structures and Alignments
Modview v2012 is a software tool that allows users to visualize and manipulate biomolecular structures and alignments in an interactive and intuitive way. Modview v2012 is based on the original Modview program developed by Dr. David S. Goodsell and his colleagues at The Scripps Research Institute. Modview v2012 has been updated and improved by adding new features and functionalities, such as:
- Support for multiple file formats, including PDB, FASTA, CLUSTAL, and MSA.
- Ability to load and display multiple structures and alignments simultaneously.
- Options to customize the appearance of structures and alignments, such as color schemes, rendering modes, labels, and annotations.
- Tools to perform basic operations on structures and alignments, such as rotation, translation, zooming, selection, alignment, superposition, and measurement.
- Functions to calculate and display various properties of structures and alignments, such as sequence identity, similarity, conservation, gaps, contacts, distances, angles, torsions, hydrogen bonds, and solvent accessibility.
- Modules to perform advanced analyses on structures and alignments, such as clustering, phylogenetic tree construction, principal component analysis, and molecular dynamics simulation.
Modview v2012 is designed to be user-friendly and easy to use. It has a graphical user interface (GUI) that consists of a main window and several dockable panels. The main window displays the structures and alignments in a three-dimensional (3D) view. The panels provide access to various options and tools for manipulating the structures and alignments. The user can also use keyboard shortcuts and mouse gestures to control the 3D view. Modview v2012 also has a command-line interface (CLI) that allows users to run scripts and batch processes.
Modview v2012 is a useful tool for researchers and students who are interested in studying biomolecular structures and alignments. It can help them to explore the structural and functional relationships between biomolecules, as well as to compare and contrast different models and hypotheses. Modview v2012 can also be used for educational purposes, as it can illustrate the principles of molecular biology and bioinformatics in a visual and interactive way.
Modview v2012 is available for download from GitHub. It is written in C++ and uses OpenGL for graphics rendering. It runs on Windows, Linux, and Mac OS X platforms. Modview v2012 is free and open source software licensed under the GNU General Public License (GPL).