It may depend on how they're stored. If your using a referenced library,
then yes, it'll show a missing original error icon/message for that
image if you simply delete the file. With those you can just delete them
from the library.
I'm not sure how it works the other way round though, as I never had any
success running a referenced library successfully. I think you get a
dialogue popping up asking if you want to remove it from the library, or
delete the file completely.
If you're rooting around in the library package, then good luck, as
Photos renames everything with a weird scrambled filename, and is likely
to cause headaches with the library.
I've also read the mixed comments regarding this, but IMHO, and IME, I'd
not do anything that isn't controlled by Photos itself, or at least a
known reliable third party app that links to the Photos Library (as
Apple have now opened it up (to a limited extent) to allow it officially).
FWIW, I think what you're wanting is something that is part of the
pre-import culling process.
My Photos process is like this:
• I generally use FastRawViewer and import new images (from a camera
card) to a working folder, whizz through and cull them
• Then import them to Photos
• Allow them to sync to the cloud.
• Edit with Raw Power on my iPad Pro (it faster and a better screen than
my old iMac).
I'm in a fortunate position of having managed to keep my collection
relatively well organised over the years. Having recently (well, last
July when I got the iPad) migrated from Lightroom, I'd already got my
collection into a nicely ordered filing system, and have no identical
duplicates.
I use Folders and Albums to organise within Photos, so I can work
with/view smaller sets if needed.
For my own preferences, I've never bothered with the task of sifting
through similar images, as I'll never know which ones I might prefer
later on.
All the best
--
Andy H