UCSF EGAN

This bug appears to stem from users using one-button mice (ie Apple mice). The current workaround is

Hi, Absolutely. You'll have to make sure you have the regulation data in a specific file format.

Hi Dirk, PermuSEED values range between 0 and one, and are not log10. Jesse On Aug 21, 2014 11:54 AM,

Hi, I'm trying to lauch Egan (human) for the first time on an iMac. I got the following error:

Well this isn't the typical Java 7 problem. It likely has to do with the mapping file that you

Hi Jesse, thanks for the reply, the curious thing is: On a Mac the calculations are done after around

Hi Christopher, This is a known issue between EGAN and Java 7 and will be fixed soon. In the meantime

I would try them both, although I've been having problems with them recently. Please let me know

Hi Alex, Sorry for the delay. If you want accurate enrichment p-values, then you need to use the

Hey Rob, This workaround works for me... http://support.apple.com/kb/ht5559 Jesse On Thu, Jan 9, 2014

Sorry about that - there's a bug with EGAN for Java 7. I anticipate that this will be fixed soon.

Hi Manu, Do you have a header row as the first line in your tab-delimited file? Are you making sure

For example, what genes are in the WNT Pathway? http://akt.ucsf.edu/EGAN/images/screenshots/

Hi, I ran into the same problem with regard to uploading a background file. Did Jesse's

Hello, Thanks for posting. Have you followed the load experiment tutorial? http://akt.ucsf.edu/EGAN/

Hello, The node border colors can only be derived from one experiment at a time. To view values from

Hello, The error message that you're posting is what results from an invalid type_definitions

Just to follow up, this issue was resolved by using a custom mapping file that contained FlyBase IDs

Hi Roel, I hope the answers in my reply to your other post will suffice. Please post again if there

Hi Roel, Here are answers to your questions: - It is not a great idea to use multiple colors in a

You're welcome. Also I forgot to mention that EGAN readily accepts custom mapping files for ID

Yes. Take a look at the gray 'H' menu to the left of the Network View. There you can hide

Hi Fernanda, Thanks for posting. Can you email me (instead of posting to the group) the first few

Hi all, I am sorry to ask such a basic question but I am new to all of this and find EGAN the most

Thanx once again!!as u have told that Using a homology bridge - experiment data for organisms that

Greetings! Thanks for posting this question. Unfortunately IPI to Entrez mapping files are not part

When I loaded my data set, I chose to load the maximum value. However, after EGAN launches, the

Hi Tim, These are interesting considerations. The ontological relationships between GO Terms are

Yes, you can do exactly that. Just make sure that the Conserved Domain (CDD) Association Node data

Hello! Thanks for writing. I'm happy to help you use EGAN for proteomics (and other) data. For