I seem to remember running into this before, and it was a Latex issue
and not specific to the UCSD template. Had something to do with
exactly where you placed the \label command . . . . Could you send a
minimal example, or at least the tex you are using to define your
table?
Novimir
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All you need to do is to place the \label statement after or inside
the \caption statement.
From the LeTeX wikibook:
"The command \label must appear after (or inside) \caption. Otherwise,
it will pick up the current section or list number instead of what you
intended."
https://secure.wikimedia.org/wikibooks/en/wiki/LaTeX/Labels_and_Cross-referencing#Fixing_wrong_labels
Novimir