Tumor Compendium v11 Public PolyA (April 2020) - hg19 or hg38?

[Khushbu Patel]

Hello,

I am trying to find whether the data that are part of Tumor Compendium v11 Public PolyA (April 2020), are they aligned to hg19 or hg38?
I could not find that information in your documentation.

I'd really appreciate if you could clarify that for me.

Thanks very much!

Best,

Khushbu

[Mary Goldman]

Hi Khushbu,

I am forwarding your email to the Treehouse team who are responsible for this data so that they can answer your question.

Best,

Mary

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Mary Goldman (she/her), Design and Outreach Engineer 

UCSC Xena

UC Santa Cruz Genomics Institute

Revealing life's code

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[Holly Beale]

Hi Kushbu-

hg38. Details here: https://github.com/UCSC-Treehouse/pipelines/blob/master/CGL_TOIL_RNA-Seq_Pipeline_versions.md

Best,

Holly

--
Holly Beale, PhD
Holly (preferred) or Dr. Beale | she/her | https://tinyurl.com/pronouce-holly-beale
Lead Computational Biologist, Treehouse & Vaske lab
MCD Biology & Genomics Institute, UCSC
hcb...@ucsc.edu | treehousegenomics.soe.ucsc.edu | vaskelab.ucsc.edu