Accessing survival data via xenaPython

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Katherine Alexander

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Nov 6, 2020, 5:48:09 PM11/6/20

to UCSC Xena and Cancer Genomics Browser

I have been trying to figure out which xenaPython function to use to access patient survival data. I'm sure there should be a function for this, but wasn't able to find one looking through the GitHub (https://github.com/ucscXena/xenaPython). Could you point me in the right direction?

I have:

hub = "https://tcga.xenahubs.net"

survivalDataset = "survival/KIRC_survival.txt"

and a list of samples for which I would like to get survival data.

Thank you!

Kate

Mary Goldman

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Nov 17, 2020, 1:50:32 PM11/17/20

to Katherine Alexander, UCSC Xena and Cancer Genomics Browser

Hi Kate,

Apologies for the late reply! You can find the survival parameters here: https://xenabrowser.net/datapages/?host=https%3A%2F%2Ftcga.xenahubs.net&dataset=survival%2FKIRC_survival.txt&allIdentifiers=true&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443 with which to complete your query.

Best,

Mary

-----

Mary Goldman, Design and Outreach Engineer

UCSC Xena

UC Santa Cruz Genomics Institute

Revealing life's code

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