Gene isoform information of CCLE cell lines
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Jiale Wu
Jan 15, 2025, 11:36:52 AMJan 15
to UCSC Xena and Cancer Genomics Browser
Is there any way that I can analyze the gene isoform information of CCLE cell lines? I found it is available for different cancer type dataset, while not CCLE cell line, using the TRANSCRIPTS panel. I am interested in the isoform information of specific genes in different cell line. Many thanks.
Mary Goldman
Jan 15, 2025, 2:42:12 PMJan 15
to Jiale Wu, UCSC Xena and Cancer Genomics Browser
Hi Jiale,
Unfortunately this is not possible. The TRANSCRIPTS visualization only has data from the UCSC Toil RNAseq Recompute Compendium: https://xenabrowser.net/datapages/?host=https%3A%2F%2Ftoil.xenahubs.net. Additionally, we do not have transcript expression from CCLE.
Best,
Mary
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Mary Goldman (she/her), Design and Outreach Engineer
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