TCGA single cell data

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Jul 3, 2025, 7:18:00 PMJul 3

to UCSC Xena and Cancer Genomics Browser

In the single cell hub, I noticed a dataset called "TCGA scRNAseq"

But when one clicks on the data or goes to visualize, there is no phenotype data available.

Is this a glitch and will these metadata be added back in?

Also, what is the source/publication of these data? I wasn't aware that there was any single-cell data from TCGA?

Thanks!

Krishna

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Jul 3, 2025, 7:58:38 PMJul 3

to Krishna Sriram, UCSC Xena and Cancer Genomics Browser

Hi Krishna,

Thanks for bringing this to our attention. This dataset was actually labeled incorrectly. We are removing it for now.

Best,

Mary

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Mary Goldman (she/her), Design and Outreach Engineer

Revealing life's code

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