GDC MMRF-COMMPASS

[Liuling Xiao]

Hi,

First of all, thanks for the platform and it's very important to us.

This is Liuling Xiao, A research associate from HMRI. I am analyzing GDC MMRF-COMMPASS database and get genes RNA expression by HTSeq - Counts (n=859) GDC Hub. I found that sample name is "MMRF_1021_1_BM_CD138pos". I am wondering whether all the gene expression are from CD138 positive cells or CD138 negative cells? Are there any paper show the original information about these samples?

Best wishes,

Liuling 

[Mary Goldman]

Hi Liuling,

Looking around I found these web pages related to the MMRF COMMPASS study:

https://gdc.cancer.gov/about-gdc/contributed-genomic-data-cancer-research/foundation-medicine/multiple-myeloma-research-foundation-mmrf

https://themmrf.org/finding-a-cure/personalized-treatment-approaches/

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7304035/

If these resources do not answer your question, I would recommend contacting the GDC directly: https://gdc.cancer.gov/support.

Best,

Mary

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Mary Goldman (she/her), Design and Outreach Engineer 

UCSC Xena

UC Santa Cruz Genomics Institute

Revealing life's code

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