Request For GRCh38 bed files

[Nicholas Rouse]

Hello,

Would you be able to share GRCh38 bed files for 150, 200, 250, and 500 kmers? I see that they are available through the uint files but I was not able to get the python script to work as I do not have an SGE cluster set up. Thank you for providing such a useful tool/resource.

Best,

Nick

[Mehran Karimzadeh]

Hello Nicholas,

You can download them for 150, 200, and 250:

https://bismap.hoffmanlab.org/raw/uint/hg38all/umap/bedFiles/k150.GRCh38.Umap.bed.gz

https://bismap.hoffmanlab.org/raw/uint/hg38all/umap/bedFiles/k200.GRCh38.Umap.bed.gz

https://bismap.hoffmanlab.org/raw/uint/hg38all/umap/bedFiles/k250.GRCh38.Umap.bed.gz

Unfortunately I don't have them for 500-mers.

Best,

Mehran

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[Nicholas Rouse]

Much appreciated. Thank you for the quick response.

Best,

Nick