Re: request for umap of rn7

[Mehran Karimzadeh]

Hello Panjun,

The software repository is at: https://github.com/hoffmangroup/umap

Unfortunately I don't have access to Umap's servers due to some change in VPN of my previous institute.

For now, you can access the previous rat genome uint files here:

https://bismap.hoffmanlab.org/raw/rnor6/umap/

If you have any questions using the software, please let me know.

Best,

Mehran

On Mon, Sep 27, 2021 at 4:17 PM Kim, Panjun <pki...@uthsc.edu> wrote:

Dear Mehran,

I tried to download and install the tool, but I found that the hg repository doesn't work. (https://bitbucket.org/hoffmanlab/umap )

Could I ask the umap of rn7 please? 

This is the latest rat reference genome.

These are the links for rn7.

Thank you,

Panjun

https://www.ncbi.nlm.nih.gov/assembly/GCF_015227675.2/

mRatBN7.2 - Genome - Assembly - NCBI Rattus norvegicus (Norway rat) genome assembly mRatBN7.2 from Wellcome Sanger Institute [GCA_015227675.2 GCF_015227675.2] www.ncbi.nlm.nih.gov

https://genome.ucsc.edu/cgi-bin/hgTracks?db=rn7&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr1%3A79348972%2D79379997&hgsid=1173624885_NdVxoK7sv94NMC1aaCtZYQo1aFPP