On 4 May 2023, at 10:20, 高政源 <joygaoz...@gmail.com> wrote:
I am a newcomer to trying to use the TVB and have found the pipeline Jupyter notebook to learn the pipeline step by step. When running the TVB PIPELINE after copying them from the pubic drive to my own collab, there are any mistakes as the picture show. Waiting for your help thanks.<1683188370482.png>--
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Thanks, I tried this way. And I believe that's the right way too.
And there's any new question.
1. I tried this pipeline with the demo dataset with the sub-CON03. And for this data, there's a /ses-postop/ path between the /sub-CON03/ and the /anat&dwi&func/. And I noticed that the path set in the converter doesn't contain the /ses-postop/ like
But my path are like
So this scipt are not suit do process for all of the data. I need to modify it to suit for my case. Right?
2. Before you share me the pipeline.sh script. I used the docker run command to generate the MRtrix3_connectome-preproc&participant two results in the mrtrix_output folder.
And I noticed using the short workaround way will save the recon-all results and It seems I must run it in this wany or I can't realize the convertion, right?.
But when I use the short workaround way. There’s a problem. Here’s my code and the error information.
Waiting for your reply. Thanks very much, again.