sim.run() data output?

[Karin Westin]

Hi!

I'm currently working on the Jansen Rit model using monitors.Raw. What I understand from the documentation (time,data) = sim.run() will then store all model state variables.

With np.shapes(data) = (16000, 4, 76, 1) I assume that "4" corresponds to model variables? If yes, which variables are extracted from the model?

Best regards and thanks in advance,

Karin

[WOODMAN Michael]

Hi

Yes (though it should be 6 for JR with the raw monitor not 4, seems like a bug) generally you can inspect sim.model.variables_of_interest to see what was kept. 

Cheers

Marmaduke 

On 21 Dec 2022, at 22:37, Karin Westin <karin.w...@gmail.com> wrote:



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[Lia Domide]

Hi Karin,

From here: https://github.com/the-virtual-brain/tvb-root/blob/master/tvb_library/tvb/simulator/models/jansen_rit.py#L195 

class JansenRit(....

    variables_of_interest = List( label="Variables watched by Monitors", choices=("y0", "y1", "y2", "y3", "y4", "y5"), default=("y0", "y1", "y2", "y3") .....)

Best,

Lia.