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Welcome to the TVB Users group
Here, the users of the Virtual Brain can ask questions, provide feedback and discussion functionality.
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Lia Domide
8/16/19
tvb-library 2.0 alpha release
Dear all, tvb-library package, version 2.0, is available now on Pypi, as an alpha release: https://
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tvb-library 2.0 alpha release
Dear all, tvb-library package, version 2.0, is available now on Pypi, as an alpha release: https://
8/16/19
Lia Domide
9/8/14
Users of TVB (registration and default account)
TVB is a web application, which gets deployed on every computer where TVB_Distribution is downloaded
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Users of TVB (registration and default account)
TVB is a web application, which gets deployed on every computer where TVB_Distribution is downloaded
9/8/14
Joey Gao
,
TVB Users
3
3:36 AM
Identification of Optimal Structural Connectivity Using Functional Connectivity and Neural Modeling
Triebkorn, Paul, Joelle Zimmermann, Leon Stefanovski, Dipanjan Roy, Ana Solodkin, Viktor Jirsa,
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Identification of Optimal Structural Connectivity Using Functional Connectivity and Neural Modeling
Triebkorn, Paul, Joelle Zimmermann, Leon Stefanovski, Dipanjan Roy, Ana Solodkin, Viktor Jirsa,
3:36 AM
Nadezhda Chaplinskaia
, …
TVB Users
3
Jul 8
Different neural mass models for different brain regions in TVB
hi, https://github.com/the-virtual-brain/tvb-root/pull/743 is a draft implementation of this and can
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Different neural mass models for different brain regions in TVB
hi, https://github.com/the-virtual-brain/tvb-root/pull/743 is a draft implementation of this and can
Jul 8
DK
,
TVB Users
2
Jul 8
Differences between Jansen-Rit Model and Coupling
hi, The TVB implementation of JR 1995 represents a single column while the paper formulates a pair of
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Differences between Jansen-Rit Model and Coupling
hi, The TVB implementation of JR 1995 represents a single column while the paper formulates a pair of
Jul 8
Ulrich Brennecke
,
WOODMAN Michael
2
Mar 31
Solver for Neurotransmitter dependencies -possible in TVB?
hi, If I can restate your question, you have a per-region parameter of extracellular dopamine, that
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Solver for Neurotransmitter dependencies -possible in TVB?
hi, If I can restate your question, you have a per-region parameter of extracellular dopamine, that
Mar 31
JESUS CABRERA ALVAREZ
,
WOODMAN Michael
5
Mar 29
Dynamic parameters
Oh, yes. Now I see it. I never used this type of meta-loop, but it does very well the trick. I leave
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Dynamic parameters
Oh, yes. Now I see it. I never used this type of meta-loop, but it does very well the trick. I leave
Mar 29
Collin Qu
, …
Lia Domide
10
Mar 29
Simulation on TVB
Hi, Maybe this notebook can help you with to explore the model: https://nbviewer.thevirtualbrain.org/
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Simulation on TVB
Hi, Maybe this notebook can help you with to explore the model: https://nbviewer.thevirtualbrain.org/
Mar 29
Nadezhda Chaplinskaia
, …
Michelangelo Fabbrizzi
5
Mar 27
How to compute a projection matrix?
Hi Nadezhda, I think it can help you read here https://neuroimage.usc.edu/brainstorm/Tutorials/
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How to compute a projection matrix?
Hi Nadezhda, I think it can help you read here https://neuroimage.usc.edu/brainstorm/Tutorials/
Mar 27
Eesha Bharti
,
Michael Schirner (michael.schirner@bih-charite.de)
2
Feb 20
Running EBRAINS MRI Pipeline on remote supercomputer
Hi Eesha, yes, the three container images (1, 2, 3) can be run independently of EBRAINS on any
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Running EBRAINS MRI Pipeline on remote supercomputer
Hi Eesha, yes, the three container images (1, 2, 3) can be run independently of EBRAINS on any
Feb 20
Alice Pierini
Feb 7
Averaged connectome across subjects
Hello everyone, I have read in some papers and conversations in this forum that sometimes averaging
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Averaged connectome across subjects
Hello everyone, I have read in some papers and conversations in this forum that sometimes averaging
Feb 7
Alice Pierini
, …
Spase Petkoski
6
Jan 30
Non physiological-like FC: low emFC-simFC correlation
Hello again, The statistics of the SC matrix could definitely impact results. To make it bit smoother
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Non physiological-like FC: low emFC-simFC correlation
Hello again, The statistics of the SC matrix could definitely impact results. To make it bit smoother
Jan 30
Lorenzo Prione
,
WOODMAN Michael
4
Jan 28
Different integrators same model
Hi On 27 Jan 2025, at 23:36, Lorenzo Prione <prione...@gmail.com> wrote: create the numpy.
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Different integrators same model
Hi On 27 Jan 2025, at 23:36, Lorenzo Prione <prione...@gmail.com> wrote: create the numpy.
Jan 28
nskplta
,
Lia Domide
6
Jan 27
Upload error: 413 Request Entity Too Large
Thanks Lia, everything works fine now :) On Saturday, 25 January 2025 at 09:54:30 UTC+1 ldo...@gmail.
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Upload error: 413 Request Entity Too Large
Thanks Lia, everything works fine now :) On Saturday, 25 January 2025 at 09:54:30 UTC+1 ldo...@gmail.
Jan 27
Chuyue Zhao
,
WOODMAN Michael
3
Jan 21
Inquiry about error in tutorial_s5_ModelingRestingStateNetworks.ipynb
Hi Marmaduke, Thank you for your reply and the provided notebook, I'll try it. Best, Chuyue On
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Inquiry about error in tutorial_s5_ModelingRestingStateNetworks.ipynb
Hi Marmaduke, Thank you for your reply and the provided notebook, I'll try it. Best, Chuyue On
Jan 21
Szymon Tyras
,
Daniele Marinazzo
3
12/16/24
Denoising for Modeling: Questions About WM/CSF Regressors
Dear Daniele, Thank you so much for answering and reassuring me about my pipeline. Although I am
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Denoising for Modeling: Questions About WM/CSF Regressors
Dear Daniele, Thank you so much for answering and reassuring me about my pipeline. Although I am
12/16/24
Eesha Bharti
,
Lia Domide
2
11/19/24
Importing to TVB Error
Hello, I am not familiar with `tvb_converter_pipeline.sh`, but we have a tutorial here. Could that
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Importing to TVB Error
Hello, I am not familiar with `tvb_converter_pipeline.sh`, but we have a tutorial here. Could that
11/19/24
Lorenzo Prione
,
WOODMAN Michael
3
10/22/24
"Fake nodes" in connectivity 192
Hi, The positions don't seem to be similar, they seem identical. But even if they were similar,
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"Fake nodes" in connectivity 192
Hi, The positions don't seem to be similar, they seem identical. But even if they were similar,
10/22/24
Dominique Hughes
, …
WOODMAN Michael
6
10/4/24
Clamping Excitatory Firing Rate with Reduced Wong Wang Model
hi the AfferentCoupling monitor is intended for debugging does not therefore respect the period
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Clamping Excitatory Firing Rate with Reduced Wong Wang Model
hi the AfferentCoupling monitor is intended for debugging does not therefore respect the period
10/4/24
MICHELANGELO FABBRIZZI
9/22/24
Speed in TVB
Dear TVB experts, I would like to understand if it is possible to use a matrix with different
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Speed in TVB
Dear TVB experts, I would like to understand if it is possible to use a matrix with different
9/22/24
JESUS CABRERA ALVAREZ
, …
WOODMAN Michael
3
9/13/24
Stochastic integrarion
hi you can set nsig to zero for all other variables. there's an example in this notebook, cell 6
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Stochastic integrarion
hi you can set nsig to zero for all other variables. there's an example in this notebook, cell 6
9/13/24
Rogelio Pegueros
,
Lia Domide
4
9/4/24
Connectivity ZIP
Could a manual edit of the connectivity files, and picking the right 85 regions work for you? You
unread,
Connectivity ZIP
Could a manual edit of the connectivity files, and picking the right 85 regions work for you? You
9/4/24
Leo Barros
,
Elike Morsink
2
9/3/24
Atlas information request
Hello, I was having the same question. Is there already more known about this? Best, Elike Op vrijdag
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Atlas information request
Hello, I was having the same question. Is there already more known about this? Best, Elike Op vrijdag
9/3/24
Szymon Tyras
, …
Daniele Marinazzo
5
8/31/24
Validity of Sliding-Window FCD as a Fitting Target
Dear Daniele, My sincere apologies for the delayed response—I must have somehow overlooked your
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Validity of Sliding-Window FCD as a Fitting Target
Dear Daniele, My sincere apologies for the delayed response—I must have somehow overlooked your
8/31/24
Lorenzo Prione
2
8/14/24
Stimulus width does not change EEG projection?
Sorry, of course the TVB function I meant is plot_pattern, not plot_stimulus. Il giorno mercoledì 14
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Stimulus width does not change EEG projection?
Sorry, of course the TVB function I meant is plot_pattern, not plot_stimulus. Il giorno mercoledì 14
8/14/24
Sándor Burian
,
Randy McIntosh
2
8/11/24
How to use VTB to simulate brain tissue instead of whole brain
TVB really isn't meant for modelling cell cultures. There are other packages that you should
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How to use VTB to simulate brain tissue instead of whole brain
TVB really isn't meant for modelling cell cultures. There are other packages that you should
8/11/24
liuxin...@gmail.com
,
WOODMAN Michael
2
7/8/24
Threshold -2.05 in 2D Epileptor model
hi, The threshold may change as a function of model parameters, but not the simulation length time.
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Threshold -2.05 in 2D Epileptor model
hi, The threshold may change as a function of model parameters, but not the simulation length time.
7/8/24
WOODMAN Michael
7/8/24
Re: [RESEAUX SOCIAUX] [TVB] PowerSpectraInteractive() not working anymore?
hi, Those viewers are deprecated. Please use plain plotting tools like `specgram`. cheers, Marmaduke
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Re: [RESEAUX SOCIAUX] [TVB] PowerSpectraInteractive() not working anymore?
hi, Those viewers are deprecated. Please use plain plotting tools like `specgram`. cheers, Marmaduke
7/8/24
Elike Morsink
,
WOODMAN Michael
2
7/8/24
Processing simulated EEG data
hi, are you working with EEG data or intracranial EEG ? most of the work in TVB has been done with
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Processing simulated EEG data
hi, are you working with EEG data or intracranial EEG ? most of the work in TVB has been done with
7/8/24
Lorenzo Prione
,
WOODMAN Michael
11
7/4/24
Unit of measure for current of pulse train
hi In principle, yes, but it is unlikely that this is the problem you wish to solve. The effect of
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Unit of measure for current of pulse train
hi In principle, yes, but it is unlikely that this is the problem you wish to solve. The effect of
7/4/24
Sergio Herrero Fernández
,
Lia Domide
2
6/25/24
how to import connectivity
Hi, TVB expectations on a Large Scale Connectivity are explained here: https://docs.thevirtualbrain.
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how to import connectivity
Hi, TVB expectations on a Large Scale Connectivity are explained here: https://docs.thevirtualbrain.
6/25/24
Lorenzo Prione
,
WOODMAN Michael
2
6/13/24
TVB EEG sensors
hi I'm not aware of a data repository, but it is possible to import the TVB surface into a
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TVB EEG sensors
hi I'm not aware of a data repository, but it is possible to import the TVB surface into a
6/13/24