Hello Edward,
thank you for using TT4J. Unfortunately, TT4J does not come with built-in support for pre-tagging. The best way to support this would be, to add a sub-class of the TokenAdapter which allows TT4J to fetch pre-tags and forward them to the TreeTagger. In this way, strictMode and performanceMode can be made aware of pre-tagging.
The two modes were added to quickly catch communication problems between TT4J and the TreeTagger process due to problematic data.
You should be able to hack TT4J into allowing pre-tags if you turn off strictMode and performanceMode. It will make the setup a bit more fragile, so you'd have to be careful not to feed data to TreeTagger that it does not like.
Feel free to open a feature request for pre-tagging. You are also welcome to contribute a patch with an extended TokenAdapter and pre-tagging awareness for strictMode and performanceMode. I'm a bit short on time recently, so it may take a while until I get to implementing that feature myself.
Cheers,
-- Richard