Error installing TRUST: ImportError: No module named _build_utils.apple_accelerate

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yhf....@gmail.com

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Jan 24, 2019, 3:09:46 AM1/24/19
to TRUST for T cell receptor hypervariable region assembly
Hi Dr Li,

I was trying to install TRUST on a cluster, using Python 2.7.12 :: Anaconda custom (64-bit) -  but encountered the following error:

File "/app/anaconda/2/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage
    caller_level = 2)
  File "/app/anaconda/2/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage
    caller_level = caller_level + 1)
  File "/app/anaconda/2/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "numpy/setup.py", line 10, in configuration
    NAME = 'trust'
  File "/app/anaconda/2/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage
    caller_level = 2)
  File "/app/anaconda/2/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage
    caller_level = caller_level + 1)
  File "/app/anaconda/2/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 884, in _get_configuration_from_setup_py
    ('.py', 'U', 1))
  File "numpy/core/setup.py", line 13, in <module>
    try:
ImportError: No module named _build_utils.apple_accelerate

I couldn't resolve the issue and was wondering if you have any advice? Thank you very much!

Best,
Teng



Bo Li

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Jan 24, 2019, 10:36:57 AM1/24/19
to yhf....@gmail.com, jian zhang, TRUST for T cell receptor hypervariable region assembly
Jian, 

Could you help with this?

Thanks!
Bo

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Jian Zhang

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Jan 27, 2019, 3:50:39 AM1/27/19
to yhf....@gmail.com, Bo Li, TRUST for T cell receptor hypervariable region assembly
Hi Teng,

I guess this is numpy installation error. Can you try to manually install numpy package or update it in your conda env? 

Thanks,
Jian

Yvonne Teng

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Jan 28, 2019, 7:50:17 AM1/28/19
to Jian Zhang, Bo Li, TRUST for T cell receptor hypervariable region assembly
Thanks, Jian. I’ll try it and let you know.

Best,
Teng

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rkanh...@gmail.com

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Feb 6, 2019, 2:56:43 AM2/6/19
to TRUST for T cell receptor hypervariable region assembly
Hi,

I am getting same error while intalling pandas. Appreciate if I can get some solution.

Thanks,
Ram
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