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Looking for Trinity 'best transcript set' scripts
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Skylar Johnson
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Aug 22, 2024, 7:32:42 AM
8/22/24
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Hi!
I am trying to generate a 'best transcript set' from my Trinity assembly following this walkthrough:
https://github.com/trinityrnaseq/trinity_community_codebase/wiki/Trinity-best-transcript-set
However, I am unable to locate the supporting scripts mentioned in the beginning from
saf.bio.caltech.edu
. Most notably, I am looking for a copy of
http://saf.bio.caltech.edu/pub/software/molbio/trinity_cdhit_feeder.pl
and
http://saf.bio.caltech.edu/pub/software/linux_or_unix_tools/match_many.pl
,
but I am unable to access the saf.bio.caltech server (it appears to have moved).
Does anyone have copies of these scripts available and could share them with me?
Thank you for your help!
Skylar
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