Variant calling on multiple samples

[Janay Fox]

Hi,

I saw awhile ago that you posted that there was a --s option for the run_variant_calling.py script to run it on multiple samples at once. Is this still the case? I am trying to run it now but got this error:

ReadAlignChunk_processChunks.cpp:202:processChunks EXITING because of FATAL ERROR in input reads: unknown file format: the read ID should start with @ or > 

so just wanted to double check!

Best,

Janay 

[Janay Fox]

By the way I got the option to work so to anyone who is wondering the option is still available!