Error while using Trinotate

[Nishant Raj]

Hi,

I want to create Trinotate sqlite database, but facing an error while using the first command provided by Trinotate.

Please help me in solving this issue.

I am attaching the command used as well as error message with this mail.

Thank you in advance

COMMAND USED:

./Trinotate --db /home/workstation2/Trinotate-Trinotate-v4.0.0/Trinotate.sqlite --create --trinotate_data_dir /home/workstation2/Trinotate-Trinotate-v4.0.0

ERROR MESSAGE:

Use of uninitialized value $blast_type in concatenation (.) or string at ./Trinotate line 200.
-CREATING /home/workstation2/Trinotate-Trinotate-v4.0.0/Trinotate.sqlite and populating data dir: /home/workstation2/Trinotate-Trinotate-v4.0.0
WARNING: SQLITE database /home/workstation2/Trinotate-Trinotate-v4.0.0/Trinotate.sqlite already exists and wont be replaced.
-sqlite db /home/workstation2/Trinotate-Trinotate-v4.0.0/Trinotate.sqlite already exists and is not being replaced. If a new boilerplate is required, copy db from: /home/workstation2/Trinotate-Trinotate-v4.0.0/TrinotateBoilerplate.sqlite
-- Skipping CMD: /home/workstation2/Trinotate-Trinotate-v4.0.0/util/admin/Build_Trinotate_Boilerplate_SQLite_db.pl TrinotateBoilerplate, checkpoint [/home/workstation2/Trinotate-Trinotate-v4.0.0/__chckpts/build_boilerplate.ok] exists.
* [Fri May 26 18:17:25 2023] Running CMD: mv TrinotateBoilerplate.sqlite pfam2go go-basic.obo pfam2go.tab NOG.annotations.tsv.gz /home/workstation2/Trinotate-Trinotate-v4.0.0/
mv: 'TrinotateBoilerplate.sqlite' and '/home/workstation2/Trinotate-Trinotate-v4.0.0/TrinotateBoilerplate.sqlite' are the same file
mv: 'pfam2go' and '/home/workstation2/Trinotate-Trinotate-v4.0.0/pfam2go' are the same file
mv: 'go-basic.obo' and '/home/workstation2/Trinotate-Trinotate-v4.0.0/go-basic.obo' are the same file
mv: 'pfam2go.tab' and '/home/workstation2/Trinotate-Trinotate-v4.0.0/pfam2go.tab' are the same file
mv: 'NOG.annotations.tsv.gz' and '/home/workstation2/Trinotate-Trinotate-v4.0.0/NOG.annotations.tsv.gz' are the same file
Error, cmd: mv TrinotateBoilerplate.sqlite pfam2go go-basic.obo pfam2go.tab NOG.annotations.tsv.gz /home/workstation2/Trinotate-Trinotate-v4.0.0/ died with ret 256 No such file or directory at /home/workstation2/Trinotate-Trinotate-v4.0.0/PerlLib/Pipeliner.pm line 187.
Pipeliner::run(Pipeliner=HASH(0x5641a40455e8)) called at ./Trinotate line 426
main::run_Trinotate_create("/home/workstation2/Trinotate-Trinotate-v4.0.0/Trinotate.sqlite", "/home/workstation2/Trinotate-Trinotate-v4.0.0") called at ./Trinotate line 237