trinity installation error

[amo...@gmail.com]

Hi, can someone please help me with trinity installation?

I am seeing following error -

Thanks

ln -sf Trimmomatic-0.36 Trimmomatic
cd bamsifter && make
make[2]: Entering directory '/volume/data/software/trinityrnaseq-v2.14.0/trinity-plugins/bamsifter'
./build_htslib.sh

cd htslib
mkdir -p build
autoheader
./build_htslib.sh: line 7: 21077 Segmentation fault      (core dumped) autoheader
Makefile:10: recipe for target 'htslib/version.h' failed
make[2]: *** [htslib/version.h] Error 139
make[2]: Leaving directory '/volume/data/software/trinityrnaseq-v2.14.0/trinity-plugins/bamsifter'
Makefile:31: recipe for target 'bamsifter_target' failed
make[1]: *** [bamsifter_target] Error 2
make[1]: Leaving directory '/volume/data/software/trinityrnaseq-v2.14.0/trinity-plugins'
Makefile:39: recipe for target 'trinity_essentials' failed
make: *** [trinity_essentials] Error 2

[Brian Haas]

hi,

installing trinity can be a painful process sometimes.  If you can use our singularity or docker image (singularity is my preferred), that would be easiest/best, as it comes with everything you need and should 'work out of the box'.

https://github.com/trinityrnaseq/trinityrnaseq/wiki/Trinity-in-Docker#trinity_singularity

best,

~b

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Brian J. Haas
The Broad Institute
http://broadinstitute.org/~bhaas