Re: using ctat_mutation with single-end samples

[Brian Haas]

Yes, if you use just --left then it should run with single-end data.

On Mon, Oct 14, 2024 at 6:06 AM Admita <caixinp...@gmail.com> wrote:

Hi,

I am trying to use the ctat_mutation with single-end samples, but only found this:Home · TrinityCTAT/ctat-mutations Wiki · GitHub, it is for the paired-end samples and long reads. I noticed that the testing folder included the 'reads_single_output', which means it can run with single-end samples, maybe just use  --left?

Thanks!

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Brian J. Haas
The Broad Institute
http://broadinstitute.org/~bhaas